| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,289,375 – 9,289,477 |
| Length | 102 |
| Max. P | 0.521515 |
| Location | 9,289,375 – 9,289,477 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 91.59 |
| Shannon entropy | 0.16764 |
| G+C content | 0.37575 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -17.54 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9289375 102 + 24543557 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC-ACAAAC--AA-CAGAAAU--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....)))))))....-......--..-.......--- ( -22.50, z-score = -1.55, R) >droSim1.chr3L 8678944 102 + 22553184 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC-ACAAAC--AA-CAGAAAU--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....)))))))....-......--..-.......--- ( -22.50, z-score = -1.55, R) >droSec1.super_0 1538300 102 + 21120651 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC-ACAAAC--AA-CAGAAAU--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....)))))))....-......--..-.......--- ( -22.50, z-score = -1.55, R) >droYak2.chr3L 21562171 103 - 24197627 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC-ACAAAC--AAACAGAAAU--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....)))))))....-......--..........--- ( -22.50, z-score = -1.60, R) >droEre2.scaffold_4784 21006196 102 - 25762168 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC-ACAAAC--AA-CAGAACA--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....)))))))....-......--..-.......--- ( -22.50, z-score = -1.40, R) >droAna3.scaffold_13337 19682120 103 + 23293914 AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGGGACAAAC--AA-CAGAAAU--- ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....))))))).(....)....--..-.......--- ( -24.30, z-score = -2.09, R) >droGri2.scaffold_15110 2096358 108 + 24565398 AAAUACAUCUGUCACAAACGGCAAUCAACGAAAUCAAUAAAUAAAAUCUUUGCUCUUUUGUCAACUGCCAGUAAUGACAUGCAAAAA-ACAACCUGAACCAACAAUUAU .........(((((...((((((.(..((((((.(((............)))...))))))..).)))).))..)))))........-..................... ( -12.00, z-score = -0.73, R) >consensus AAAUGCAUGUGGCACAAAUGGCAAUCAGCGACAUUAAUAAAUAAAAUCGUUGGUCUUUUGCCAACCGACAGUAAUAACAUGCACGGC_ACAAAC__AA_CAGAAAU___ ...(((((((.((.....(((((((((((((..(((.....)))..))))))))....))))).......))....))))))).......................... (-17.54 = -18.30 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:26 2011