| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,287,961 – 9,288,024 |
| Length | 63 |
| Max. P | 0.995996 |
| Location | 9,287,961 – 9,288,024 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 86.83 |
| Shannon entropy | 0.23757 |
| G+C content | 0.45281 |
| Mean single sequence MFE | -16.84 |
| Consensus MFE | -13.22 |
| Energy contribution | -15.46 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9287961 63 + 24543557 GAUGCAACAGUACGUAUACUUCAUAUGUCCCUACAAGGACUUGCAUUACGUAUACGUCCCGUU .....(((.(.((((((((.......((((......)))).........)))))))).).))) ( -14.29, z-score = -1.86, R) >droSim1.chr3L 8677516 63 + 22553184 GAUGCAACGGUACGUAUACUUCAUGUGUCCCUACAACGACUUGCAUAACGUAUACGUCCCGUU .....(((((.((((((((...(((((((........)))..))))...)))))))).))))) ( -19.80, z-score = -3.20, R) >droSec1.super_0 1536930 63 + 21120651 GAUGCAACGGUACGUAUACUUCAUGUGUCCCUACAACGACUUGCAUAACGUAUACGUCCCGUU .....(((((.((((((((...(((((((........)))..))))...)))))))).))))) ( -19.80, z-score = -3.20, R) >droYak2.chr3L 21560738 55 - 24197627 --------CGUACAUUUACUUCAUGUGUCCCCACAAGGACUUGCAUAACGUAUACGACCCGUU --------((((....(((...((((((((......))))..))))...)))))))....... ( -9.10, z-score = -0.57, R) >droEre2.scaffold_4784 21004808 63 - 25762168 AGUGCAACGGUACGUAUACUUCAUGUGUCCCCACAAGGACUUACAUAACGUAUACGACCCGUU .....(((((..(((((((...((((((((......))))..))))...)))))))..))))) ( -21.20, z-score = -3.45, R) >consensus GAUGCAACGGUACGUAUACUUCAUGUGUCCCUACAAGGACUUGCAUAACGUAUACGUCCCGUU .....(((((.((((((((...((((((((......))))..))))...)))))))).))))) (-13.22 = -15.46 + 2.24)
| Location | 9,287,961 – 9,288,024 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 86.83 |
| Shannon entropy | 0.23757 |
| G+C content | 0.45281 |
| Mean single sequence MFE | -21.74 |
| Consensus MFE | -18.70 |
| Energy contribution | -20.26 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.87 |
| SVM RNA-class probability | 0.995996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9287961 63 - 24543557 AACGGGACGUAUACGUAAUGCAAGUCCUUGUAGGGACAUAUGAAGUAUACGUACUGUUGCAUC (((((.((((((((...(((...(((((....))))).)))...)))))))).)))))..... ( -21.60, z-score = -3.30, R) >droSim1.chr3L 8677516 63 - 22553184 AACGGGACGUAUACGUUAUGCAAGUCGUUGUAGGGACACAUGAAGUAUACGUACCGUUGCAUC (((((.((((((((.(((((...(((........))).))))).)))))))).)))))..... ( -22.90, z-score = -3.26, R) >droSec1.super_0 1536930 63 - 21120651 AACGGGACGUAUACGUUAUGCAAGUCGUUGUAGGGACACAUGAAGUAUACGUACCGUUGCAUC (((((.((((((((.(((((...(((........))).))))).)))))))).)))))..... ( -22.90, z-score = -3.26, R) >droYak2.chr3L 21560738 55 + 24197627 AACGGGUCGUAUACGUUAUGCAAGUCCUUGUGGGGACACAUGAAGUAAAUGUACG-------- .....(((((.(((.(((((...(((((....))))).))))).))).))).)).-------- ( -13.80, z-score = -0.99, R) >droEre2.scaffold_4784 21004808 63 + 25762168 AACGGGUCGUAUACGUUAUGUAAGUCCUUGUGGGGACACAUGAAGUAUACGUACCGUUGCACU (((((..(((((((.((((((..(((((....))))))))))).)))))))..)))))..... ( -27.50, z-score = -4.29, R) >consensus AACGGGACGUAUACGUUAUGCAAGUCCUUGUAGGGACACAUGAAGUAUACGUACCGUUGCAUC (((((.((((((((.(((((...(((((....))))).))))).)))))))).)))))..... (-18.70 = -20.26 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:25 2011