| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,244,603 – 9,244,657 |
| Length | 54 |
| Max. P | 0.928383 |
| Location | 9,244,603 – 9,244,657 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 88.30 |
| Shannon entropy | 0.20636 |
| G+C content | 0.48973 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -14.75 |
| Energy contribution | -14.53 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9244603 54 - 24543557 ------GCUGUUGUCGCUGGCAUUUGGUUAGUUGUUAAG---CCAAAUCCGAAUGUUAGCCGG ------.........((((((((((((....(((.....---.)))..))))))))))))... ( -17.40, z-score = -2.46, R) >droSim1.chr3L 8641681 54 - 22553184 ------GCUGUUGUCGCUGGCAUUUGGUUAGUUGUUAAG---CCAAAUCCGAGUGUUAGCCGG ------.........((((((((((((....(((.....---.)))..))))))))))))... ( -17.40, z-score = -2.34, R) >droSec1.super_0 1501494 54 - 21120651 ------UCUGUUGUCGCUGGCAUUUGGUUAGUUGUUAAG---CCAAAUCGGAGUGUUAGCCGG ------.........((((((((((.(....(((.....---.)))..).))))))))))... ( -13.70, z-score = -1.18, R) >droYak2.chr3L 21523752 54 + 24197627 ------GCUGUUGUCGCUGGCAUUUGGUUAGUUGUUAAG---CCAAAUCCGAGUGUUAGCCGG ------.........((((((((((((....(((.....---.)))..))))))))))))... ( -17.40, z-score = -2.34, R) >droEre2.scaffold_4784 20963606 57 + 25762168 ------GCUGUUGUCGCUGGCAUUUGGUAAGUUGUUAAGCGGCCAAAUCCAAGUGUUAGCCGG ------.........((((((((((((...((((.....)))).....))))))))))))... ( -19.40, z-score = -2.17, R) >droAna3.scaffold_13337 19644382 60 - 23293914 UCUGUUGCUGUUGCUGUUAGCAUUUGGUUAGUUGUUAAG---CCAAAGCCGAGUGUUAGGCGG .(((((((....))...((((((((((((.(((....))---)...))))))))))))))))) ( -17.10, z-score = -1.31, R) >consensus ______GCUGUUGUCGCUGGCAUUUGGUUAGUUGUUAAG___CCAAAUCCGAGUGUUAGCCGG ...............((((((((((((....(((.........)))..))))))))))))... (-14.75 = -14.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:22 2011