| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,241,526 – 9,241,588 |
| Length | 62 |
| Max. P | 0.692771 |
| Location | 9,241,526 – 9,241,588 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.53185 |
| G+C content | 0.56871 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -9.97 |
| Energy contribution | -8.72 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9241526 62 + 24543557 ACCCAGGGGGCGUUCGUAAACACACAUAAAGCAUACGCCCCAUUGUGCUGGCAAAGCGACAC ......(((((((..((.............))..)))))))..((((((.....))).))). ( -18.42, z-score = -1.19, R) >droPer1.super_58 130584 59 + 410386 -CCCAAGAGGUGUGUGCCAUAAGGG--AGUGUGUGUGUGUGUAUGUGUGGGCCAGGGGGCAC -.(((..(.(((..(((((((....--....)))).)))..))).).)))(((....))).. ( -14.70, z-score = 0.09, R) >dp4.chrXR_group5 458132 59 - 740492 -CCCAAGAGGUGUGUGCCAUAAGGG--AGUGUGUGUGUGUGUAUGUGUGGGCCAGGGGGCAC -.(((..(.(((..(((((((....--....)))).)))..))).).)))(((....))).. ( -14.70, z-score = 0.09, R) >droSim1.chr3L 8638565 62 + 22553184 ACCCAGGGGGCGUUCGUUAACACACAUAAAGCAUACGCCCCAUUGUGCUGGCAAAGCGACAC ......(((((((..(((...........)))..)))))))..((((((.....))).))). ( -19.20, z-score = -1.46, R) >droSec1.super_0 1498405 62 + 21120651 ACCCAGGGGGCGUUCGUUAACACACAUAAAGCAUACGCCCCAUUGUGCUGGCAAAGCGACAC ......(((((((..(((...........)))..)))))))..((((((.....))).))). ( -19.20, z-score = -1.46, R) >droYak2.chr3L 21520366 62 - 24197627 UCCCAGGGGGCGUUCGCAAACACACAUAAAGCGUACGCCCCAUUGUGCUGGCACAGCAACAC ...((((((((((.(((.............))).))))))).)))(((((...))))).... ( -23.72, z-score = -2.92, R) >consensus ACCCAGGGGGCGUUCGCAAACACACAUAAAGCAUACGCCCCAUUGUGCUGGCAAAGCGACAC ..(((((((((((..((.............))..)))))))......))))........... ( -9.97 = -8.72 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:21 2011