| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,222,585 – 9,222,686 |
| Length | 101 |
| Max. P | 0.889025 |
| Location | 9,222,585 – 9,222,686 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.20 |
| Shannon entropy | 0.49969 |
| G+C content | 0.37164 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -12.36 |
| Energy contribution | -13.24 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9222585 101 - 24543557 AGGGUUAUGGGUUGAAAGU--AAAUUAUCAUAAGCUCAUUGCUUUUGAUGUGUGCUUUAUGAGUUCGCCGAGGUGUUUUGGCCAGAUUCGGUUUAUUAAAUAC .(((((..(..((.(((((--(...(((((.((((.....)))).)))))..))))))...))..)((((((....))))))..))))).............. ( -23.80, z-score = -1.16, R) >droWil1.scaffold_181024 1319095 85 - 1751709 ---------AAAUGAAAAUUCGUAUAAUUGUAAGUGAAACGCUUUCAAU-UCUAACUUACAA--CCAGCCAGACAUUUCUCUUUCAUUCACUCUCUC------ ---------.(((((((..........((((((((..............-....))))))))--......(((....))).))))))).........------ ( -9.27, z-score = -1.10, R) >droEre2.scaffold_4784 20941502 100 + 25762168 AGGGUUAUGGGGUGGAAGU--AAAUUAUCAUAAGCUCAUUGCUUUUGAUGUGUGGUUUGUGAGUUUG-CGAGGUGUUUUGCCCGGAUUCGGCUUAUUAAAUAC .(((((...(((..(((((--((((..(((((((((((((......))))...))))))))))))))-)......)))..))).))))).............. ( -24.10, z-score = -1.06, R) >droSec1.super_0 1478655 101 - 21120651 AGGGUUAUGGGUUGGAAGU--AAAUUAUCAUAAGCUCAUUGCUUUUGAUGUGUGCUUUAUGAGUUUGCCGAGGUGUUUUGGGCAGAUUCGGUUUAUUAAAUAC ..............(((((--(...(((((.((((.....)))).)))))..)))))).((((((((((.((.....)).))))))))))............. ( -27.50, z-score = -2.80, R) >droSim1.chr3L 8619510 101 - 22553184 AGGGUUAUGGGUUGGAAGU--AAAUUAUCAUAAGCUCAUUGCUUUUGAUGUGUGCUUUAUGAGUUUGUCGAGGUGUUUUGGCCAGAUUCGGUUUAUUAAAUAC ..............(((((--(...(((((.((((.....)))).)))))..)))))).(((((((((((((....))))).))))))))............. ( -22.70, z-score = -1.30, R) >consensus AGGGUUAUGGGUUGGAAGU__AAAUUAUCAUAAGCUCAUUGCUUUUGAUGUGUGCUUUAUGAGUUUGCCGAGGUGUUUUGGCCAGAUUCGGUUUAUUAAAUAC ..............(((((......(((((.((((.....)))).)))))...))))).(((((((((((((....))))).))))))))............. (-12.36 = -13.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:19 2011