| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,211,000 – 9,211,055 |
| Length | 55 |
| Max. P | 0.898664 |
| Location | 9,211,000 – 9,211,055 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 90.79 |
| Shannon entropy | 0.17525 |
| G+C content | 0.48624 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -12.12 |
| Energy contribution | -12.81 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9211000 55 - 24543557 ---GAGCUAC-GACCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ---((((...-...........(((((..-...)))))((((..(....)..)))))))) ( -14.70, z-score = -1.98, R) >droSim1.chr3L 8608619 55 - 22553184 ---GAGUUAC-GACCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ---(((((((-......((..((((((..-...))))))..))......))))))).... ( -17.30, z-score = -3.23, R) >droSec1.super_0 1467899 55 - 21120651 ---GAGUUAC-GACCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ---(((((((-......((..((((((..-...))))))..))......))))))).... ( -17.30, z-score = -3.23, R) >droYak2.chr3L 21489824 55 + 24197627 ---GAGUUAC-GACCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ---(((((((-......((..((((((..-...))))))..))......))))))).... ( -17.30, z-score = -3.23, R) >droEre2.scaffold_4784 20928445 58 + 25762168 GGCGAGCUUC-GACCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ((((((((((-(.....((..((((((..-...))))))..)).)).))))...))))). ( -16.60, z-score = -1.19, R) >droAna3.scaffold_13337 19612198 55 - 23293914 ---GAGUUAC-GGCCCACAGAUGGCAAUC-AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ---(((((((-......((..((((((..-...))))))..))......))))))).... ( -17.30, z-score = -2.27, R) >dp4.chrXR_group5 420742 57 + 740492 ---GAGUUACGGCCCCACAGAUGGCAAUCAAUUUUCCCAGAUGCCGAAAGUAAUCCCCUU ---(..(((((....).....(((((.((..........)))))))...))))..).... ( -7.90, z-score = -0.06, R) >droPer1.super_58 93626 54 - 410386 ---GAGUUAC-GCCCCACAGAUGGCAAUC-AUUUUCCCAGAUG-CGAAAGUAAUCCCCAU ---.......-(((........)))....-.........((((-(....)).)))..... ( -7.70, z-score = -1.13, R) >consensus ___GAGUUAC_GACCCACAGAUGGCAAUC_AAUUUGCCGGAUGCCGAAAGUAAUUCGCUU ...(((((((.......((..((((((......))))))..))......))))))).... (-12.12 = -12.81 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:16 2011