| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,201,640 – 9,201,714 |
| Length | 74 |
| Max. P | 0.586307 |
| Location | 9,201,640 – 9,201,714 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.48900 |
| G+C content | 0.43558 |
| Mean single sequence MFE | -14.91 |
| Consensus MFE | -9.64 |
| Energy contribution | -9.73 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9201640 74 - 24543557 AAGGAGUAAACAGCU---GCCGC---GCUCGACAAGCGGCAAUGUCAGCAGUUUAAUAAGAAAGUAAAAAUCAUACAACC ..((.((..(((..(---(((((---.........)))))).)))..))..............(((.......)))..)) ( -15.00, z-score = -1.19, R) >droSim1.chr3L 8599189 74 - 22553184 AAGGAGUAAACAGCU---GCCGC---GCUCGACAAGCGGCAAUGUCAGCAGUUUAACAAGAAAGUAAAAAUCAUACAACC ..((.((..(((..(---(((((---.........)))))).)))..))..............(((.......)))..)) ( -15.00, z-score = -1.08, R) >droSec1.super_0 1458705 74 - 21120651 AAGGAGUAAACAGCU---GCCGC---GCUCGACAAGCGGCAAUGUCAGCAGUUUAACAAGAAAGUAAAAAUCAUACAACC ..((.((..(((..(---(((((---.........)))))).)))..))..............(((.......)))..)) ( -15.00, z-score = -1.08, R) >droYak2.chr3L 21479310 74 + 24197627 AAGGAGUAAACAGCU---GCCGC---GUUCGACAAGCGGCAAUGUCAGCAGUUUAACAAGAAAGCAAACGUAAUAUAACC ..((.((..(((..(---(((((---.........)))))).)))..)).((((.......)))).............)) ( -15.70, z-score = -1.04, R) >droEre2.scaffold_4784 20918781 74 + 25762168 AAGGAGUAAACAGCU---GCCGC---GCUCGACAAGCGGCCAUGUCAGCAGUUUAACAAGAAAGCAAAUUUAAUAUAACC ..(...(((((.(((---(((((---.........)))))......))).))))).)....................... ( -13.80, z-score = -0.18, R) >droAna3.scaffold_13337 19602825 64 - 23293914 ACGGAGUAAACAGCU---GCCGCCGUAUUCAUAAAGCGGCAAUGUCAGCAAUUUAACGCGAAAAGUU------------- .....((..(((..(---(((((..((....))..)))))).)))..))..................------------- ( -14.20, z-score = -0.39, R) >droMoj3.scaffold_6680 24311978 79 + 24764193 AUAGAGUAAAUCGUUGUGGUCGCAUUGAUCGACGCGUCGCAAUGUCUGUUCUUUAACAA-CAACCAACAAAAAUACAAAU .(((((.....((((((((.(((.((....)).)))))))))))......)))))....-.................... ( -15.70, z-score = -0.95, R) >consensus AAGGAGUAAACAGCU___GCCGC___GCUCGACAAGCGGCAAUGUCAGCAGUUUAACAAGAAAGCAAAAAUAAUACAACC ......(((((.(((...(((((............)))))......))).)))))......................... ( -9.64 = -9.73 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:15 2011