| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,182,544 – 9,182,640 |
| Length | 96 |
| Max. P | 0.998742 |
| Location | 9,182,544 – 9,182,640 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 84.88 |
| Shannon entropy | 0.31474 |
| G+C content | 0.35638 |
| Mean single sequence MFE | -19.74 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.24 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.47 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.47 |
| SVM RNA-class probability | 0.998742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9182544 96 - 24543557 CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUUACCCACCACCGUAGCCAG- ................(((((((.(........((........))...(((((((((((((....))))))))))))).....).)))))))....- ( -21.00, z-score = -4.13, R) >droSim1.chr3L 8580379 96 - 22553184 CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUAACCCACCACCAUAGCCAG- .....(.(((.((((..((((((.......))))))..)))).......((((((((((((....))))))))))))............))).)..- ( -18.40, z-score = -3.67, R) >droSec1.super_0 1439879 96 - 21120651 CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUUACCCACCACCGUAGCCAG- ................(((((((.(........((........))...(((((((((((((....))))))))))))).....).)))))))....- ( -21.00, z-score = -4.13, R) >droYak2.chr3L 21459455 95 + 24197627 CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGCCACCACCCACAGCGAACA-- .....((((..((((..((((((.......))))))..)))))).))...(((((((((((....)))))))))))...................-- ( -16.10, z-score = -2.26, R) >droEre2.scaffold_4784 20897494 85 + 25762168 CAUUAGGCUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUUACCCCAC------------ .....((((..((((..((((((.......))))))..))))))))..(((((((((((((....))))))))))))).......------------ ( -21.50, z-score = -4.62, R) >droAna3.scaffold_13337 19583056 97 - 23293914 CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCGGAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUUACCCGGCCCACGCCCCCCU .............((..((((((.......))))))..))((.(((..(((((((((((((....)))))))))))))....))))).......... ( -21.90, z-score = -2.71, R) >droWil1.scaffold_181024 373062 86 + 1751709 CAUUAAACUAAUUGAAAUGCGGUUCAACAAAUUGCAAAUCAAAGCUCGAACAUUUUGAUUUUAAUAAAUUAAAAUGUGGCCAACAA----------- ...........((((..(((((((.....)))))))..)))).(((...((((((((((((....)))))))))))))))......----------- ( -18.30, z-score = -2.81, R) >consensus CAUUAGACUAAUUGAACUGCGGUCGACUCAAUCGCAAAUCAAAGCUCAAACAUUUUGAUUUUAAUAAAUUAAAAUGUUACCCACCACCGUAGCCA__ ...........((((..((((((.......))))))..)))).......((((((((((((....)))))))))))).................... (-16.46 = -16.24 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:10 2011