| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,180,442 – 9,180,532 |
| Length | 90 |
| Max. P | 0.528794 |
| Location | 9,180,442 – 9,180,532 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 92.66 |
| Shannon entropy | 0.13732 |
| G+C content | 0.58816 |
| Mean single sequence MFE | -40.75 |
| Consensus MFE | -31.79 |
| Energy contribution | -31.72 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9180442 90 + 24543557 -----AUUUGCCAGUGCCAGCUGCCGC---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA -----.((..(..((((((((((((((---((......))))).(((((.(((((.(......).)))))))))).....)))))))).))).)..)) ( -37.60, z-score = -1.48, R) >droPer1.super_58 58408 98 + 410386 AUGGCCAGUGCCAGUGCCAGCUGCCGCCGCCUCUUGAUGGGUGGGUGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA .((((....))))(((((((((((..((((((......))))))(((((((((((.(......).)))))).)))))...)))))))).)))...... ( -45.50, z-score = -2.02, R) >dp4.chrXR_group5 385193 98 - 740492 AUGGCCAGUGCCAGUGCCAGCUGCCGCCGCCUCUUGAUGGGUGGGUGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA .((((....))))(((((((((((..((((((......))))))(((((((((((.(......).)))))).)))))...)))))))).)))...... ( -45.50, z-score = -2.02, R) >droAna3.scaffold_13337 19580678 94 + 23293914 ACGG-GAUUGCCAGUGCCAGCUGCCGG---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUGGCGCGCACUUAGCAGCUGGACAUGGUGAA ....-..(..(((...(((((((((.(---(((.....)))).)(((((.(((((.(......)))))).))))).....))))))))...)))..). ( -47.00, z-score = -3.34, R) >droEre2.scaffold_4784 20895275 90 - 25762168 -----AUUUGCCAGUGCCAGCUGCCGC---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA -----.((..(..((((((((((((((---((......))))).(((((.(((((.(......).)))))))))).....)))))))).))).)..)) ( -37.60, z-score = -1.48, R) >droYak2.chr3L 21457177 90 - 24197627 -----AUUUGCCAGUGCCAGCUGCCGC---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA -----.((..(..((((((((((((((---((......))))).(((((.(((((.(......).)))))))))).....)))))))).))).)..)) ( -37.60, z-score = -1.48, R) >droSec1.super_0 1437762 89 + 21120651 -----AUUUGCCAGUGCCAGCUGCCGC---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGC-UUUGCGCGCACUUAGCAGCUGGACAUAGUGAA -----.((..(..((((((((((((((---((......))))).(((((.(((((.(......))-))))))))).....)))))))).))).)..)) ( -37.60, z-score = -1.65, R) >droSim1.chr3L 8578243 90 + 22553184 -----AUUUGCCAGUGCCAGCUGCCGC---CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA -----.((..(..((((((((((((((---((......))))).(((((.(((((.(......).)))))))))).....)))))))).))).)..)) ( -37.60, z-score = -1.48, R) >consensus _____AUUUGCCAGUGCCAGCUGCCGC___CUCUUGAUGGGUGGGCGUGGCAAGGACAUGAACGCCUUUGCGCGCACUUAGCAGCUGGACAUAGUGAA .............(((((((((((......(....).((((((.(((..(..(((.(......)))))..))).)))))))))))))).)))...... (-31.79 = -31.72 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:09 2011