| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,178,897 – 9,178,990 |
| Length | 93 |
| Max. P | 0.857990 |
| Location | 9,178,897 – 9,178,990 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.74 |
| Shannon entropy | 0.58151 |
| G+C content | 0.49259 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -11.93 |
| Energy contribution | -11.51 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9178897 93 + 24543557 UUCAUUUUAGGUGGCGCGCAGCAC-ACGUUGCGUAUACGUAAUGGUCGAUUGCCUGCGUUCAC---GUUACGUAUAUGCCGCCUAGUUUCAGCCAGU------- ......((((((((((((((((..-..)))))))((((((((((...((.((....)).)).)---)))))))))..)))))))))...........------- ( -37.10, z-score = -3.48, R) >droWil1.scaffold_181024 367857 100 - 1751709 -UCAUUGUUUUUGUUGUUGAGCAUGACGCUGCGUAUACGUUAUGGCUGACUGAAUGUAUUUGCUGCGUUACGUAUGUAUAUGUAUGCCGCG--UAGUUUUUUA- -((((.((((........))))))))(((.(((.(((((((..(.....)..))))))).))).)))((((((..((((....)))).)))--))).......- ( -22.10, z-score = 0.88, R) >dp4.chrXR_group5 383903 83 - 740492 ---GUUGCUUUUGUUGCCGAUUGGCGUGCCACG----CGUUGCG------UAUACGUAUACAC--GUAUACGUACACGCCGCCUAGUU-----UAAUUUCUGU- ---((.((......((((....)))).)).))(----(((((((------(((((((....))--))))))))).)))).........-----..........- ( -25.30, z-score = -0.96, R) >droAna3.scaffold_13337 19579293 91 + 23293914 UUCAUUUUACGUGUCGUGGAGCAC-ACGUUGCGUAUACGUCAUGGCCGAUUGCCUGCGUUCAC---GUUACGUAUACGCCACCUAGUU-----CAGUUUU---- ........(((((((.....).))-)))).((((((((((...(((.....))).(((....)---)).)))))))))).........-----.......---- ( -24.70, z-score = -0.82, R) >droEre2.scaffold_4784 20893655 93 - 25762168 UUCAUUUUAGGUGGCGCGGAGCAC-ACGUUGCGUAUACGUCAUGGUCGAUUGCCUGCGUUCAC---GUUACGUAUACGCCGCCUAGUUUCAGUCAGU------- ......((((((((((.(.....)-((((.((((..(((.((.(((.....))))))))..))---)).))))...))))))))))...........------- ( -31.30, z-score = -1.72, R) >droYak2.chr3L 21455442 100 - 24197627 UUCAUUUUAGGUGGCGCGCAGCAC-ACGUUGCGUAUACGUCAUGGUCGAUUGCCUGCGUUCAC---GUUACGUAUACGCCGCCUAGUUUCAGCCAGUUUUCAGU ......(((((((((..(((((..-..)))))((((((((.(((...((.((....)).)).)---)).))))))))))))))))).................. ( -35.20, z-score = -3.06, R) >droSec1.super_0 1436226 93 + 21120651 UUCAUUUUAGGUGGCGCGCAGCAC-ACGUUGCGUAUACGUCAUGGUCGAUUGCCUGCGUUCAC---GUUACGUAUACGCCGCCUAGUUUCAGCCAGU------- ......(((((((((..(((((..-..)))))((((((((.(((...((.((....)).)).)---)).)))))))))))))))))...........------- ( -35.20, z-score = -2.89, R) >droSim1.chr3L 8576684 93 + 22553184 UUCAUUUUAGGUGGCGCGCAGCAC-ACGUUGCGUAUACGUCAUGGUCGAUUGCCUGCGUUCAC---GUUACGUAUACGCCGCCUAGUUUCAGCCAGU------- ......(((((((((..(((((..-..)))))((((((((.(((...((.((....)).)).)---)).)))))))))))))))))...........------- ( -35.20, z-score = -2.89, R) >consensus UUCAUUUUAGGUGGCGCGCAGCAC_ACGUUGCGUAUACGUCAUGGUCGAUUGCCUGCGUUCAC___GUUACGUAUACGCCGCCUAGUUUCAGCCAGU_______ ............(((((...(((......)))((((((((.((....((.((....)).)).....)).)))))))))).)))..................... (-11.93 = -11.51 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:09 2011