| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,162,491 – 9,162,584 |
| Length | 93 |
| Max. P | 0.625910 |
| Location | 9,162,491 – 9,162,584 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 96.79 |
| Shannon entropy | 0.05641 |
| G+C content | 0.27678 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -12.12 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9162491 93 - 24543557 UAUUCAAAACCAAAUAAUCCACUAGUUCAAAUAAAUAUUUAUUUACUAGGCGCCUUUGUUUUUGAAAUACUUU-CUUUUAAUUGAGCUACUGCA ..(((((((.((((.......(((((..((((((....))))))))))).....)))).))))))).......-...........((....)). ( -13.60, z-score = -1.76, R) >droSim1.chr3L 8560000 93 - 22553184 UAUUCAAAACCAAAUAAUCCACUAGUUCAAAUAAAUAUUUAUUUACUAGGCGCCUUUGUUUUUGAAAUACUUU-CUUUUAAUUGAGCUACUGCA ..(((((((.((((.......(((((..((((((....))))))))))).....)))).))))))).......-...........((....)). ( -13.60, z-score = -1.76, R) >droSec1.super_0 1419786 93 - 21120651 UAUUCAAAACCAAAUAAUCCACUAGUUCAAAUAAAUAUUUAUUUACUAGGCGCCUUUGUUUUUGAAAUACUUU-CUUUUAAUUGAGCUACUGCA ..(((((((.((((.......(((((..((((((....))))))))))).....)))).))))))).......-...........((....)). ( -13.60, z-score = -1.76, R) >droYak2.chr3L 21438286 94 + 24197627 UAUUCAAAACCAAAUAAUCCACUAGUUCGAAUAAAUAUUUAUUUACUAGGCGCCUUUGUUUUUUCAAUACUUUCCUUUUGAUUGAGCUACUGCA .....................(((((..((((((....)))))))))))..((....((((..((((..........))))..))))....)). ( -13.30, z-score = -1.60, R) >droEre2.scaffold_4784 20876827 93 + 25762168 UAUUCAAAACCAAAUAAUCCACUAGUUCGAAUAAAUAUUUAUUUACUAGGCGCCUGUGUUUUUGAAAUAUUUU-CUUUUAAUUGAGCUACUGCA ...................((.((((((((.((((.(..(((((...(((((....)))))...)))))..).-..)))).)))))))).)).. ( -14.30, z-score = -1.36, R) >consensus UAUUCAAAACCAAAUAAUCCACUAGUUCAAAUAAAUAUUUAUUUACUAGGCGCCUUUGUUUUUGAAAUACUUU_CUUUUAAUUGAGCUACUGCA ...................((.((((((((.((((.(..(((((...(((((....)))))...)))))..)....)))).)))))))).)).. (-12.12 = -11.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:06 2011