Locus 6713

Sequence ID dm3.chr3L
Location 9,127,415 – 9,127,479
Length 64
Max. P 0.930206
window9240

overview

Window 0

Location 9,127,415 – 9,127,479
Length 64
Sequences 5
Columns 64
Reading direction reverse
Mean pairwise identity 99.06
Shannon entropy 0.01517
G+C content 0.58437
Mean single sequence MFE -15.06
Consensus MFE -14.64
Energy contribution -14.40
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -1.89
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.35
SVM RNA-class probability 0.930206
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 9127415 64 - 24543557
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGUCGUCGCGUUACGUCA
...((((.(((((.((..((((.((...............))))))...)).))))).)).)). ( -14.66, z-score =  -1.80, R)
>droEre2.scaffold_4784 20841040 64 + 25762168
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGCCGUCGCGUUACGUCA
...((((.((((((.(..((((.((...............))))))..).).))))).)).)). ( -15.66, z-score =  -2.03, R)
>droYak2.chr3L 21403726 64 + 24197627
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGCCGUCGCGUUACGUCA
...((((.((((((.(..((((.((...............))))))..).).))))).)).)). ( -15.66, z-score =  -2.03, R)
>droSec1.super_0 1386401 64 - 21120651
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGUCGUCGCGUUACGUCA
...((((.(((((.((..((((.((...............))))))...)).))))).)).)). ( -14.66, z-score =  -1.80, R)
>droSim1.chr3L 8535353 64 - 22553184
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGUCGUCGCGUUACGUCA
...((((.(((((.((..((((.((...............))))))...)).))))).)).)). ( -14.66, z-score =  -1.80, R)
>consensus
CCAGAGUUACGCGCCGUAGCUGUGUUUUCCACUCAGUCCCACCAGUCGUCGUCGCGUUACGUCA
...((((.((((((.(..((((.((...............))))))..).).))))).)).)). (-14.64 = -14.40 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:03 2011