| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,114,483 – 9,114,622 |
| Length | 139 |
| Max. P | 0.842676 |
| Location | 9,114,483 – 9,114,622 |
|---|---|
| Length | 139 |
| Sequences | 8 |
| Columns | 162 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.47035 |
| G+C content | 0.48451 |
| Mean single sequence MFE | -44.97 |
| Consensus MFE | -21.64 |
| Energy contribution | -21.22 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9114483 139 + 24543557 GGUUCUAUUUAUGGCCA-CACUUUUC--AAAUCCCCCAA--CGAAUGGCGGCCAUAAAAGCCGC---ACGCAGUUGACCCACA---CAUGCUGACAUGGGGCCUCGG------------CCCUCUUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ....(((((..(((.((-(.......--........(((--(.....(((((.......)))))---.....))))((((((.---.(((((((...(((((....)------------)))).)))))))...((....))..))))))))).)))))))) ( -49.10, z-score = -2.39, R) >droSim1.chr3L_random 431572 139 + 1049610 GGUUCUAUUUAUGGCCA-CACUUUUC--AAAUCCCCCAA--CGAAUGGCGGCCAUAAAAGCCGC---ACGCAGUUGACCCACA---CAUGCUGACAUGGGGCCUCGG------------CCCUCUUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ....(((((..(((.((-(.......--........(((--(.....(((((.......)))))---.....))))((((((.---.(((((((...(((((....)------------)))).)))))))...((....))..))))))))).)))))))) ( -49.10, z-score = -2.39, R) >droSec1.super_0 1377324 139 + 21120651 GGUUCUAUUUAUGGCCA-CACUUUUC--AAAUCCCCCAA--CGAAUGGCGGCCAUAAAAGCCGC---ACGCAGUUGACCCACA---CAUGCUGACAUGGGGCCUCGG------------CCCUCUUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ....(((((..(((.((-(.......--........(((--(.....(((((.......)))))---.....))))((((((.---.(((((((...(((((....)------------)))).)))))))...((....))..))))))))).)))))))) ( -49.10, z-score = -2.39, R) >droYak2.chr3L 21394381 132 - 24197627 GGUUCUAUUUAUGGCCA-CACUUUUC--AAAAUCCCCAA--CGAACGGCGGCCAUAAAAGCCGC---ACGCAGUUGACCCACA---CAUGCUGACAUGGGGCCUC-------------------UUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ....(((((..(((.((-(.......--........(((--(...(((((((.......)))))---.))..))))((((((.---.(((((((...(....)..-------------------)))))))...((....))..))))))))).)))))))) ( -39.80, z-score = -1.07, R) >droEre2.scaffold_4784 20831912 139 - 25762168 GGUUCUAUUUAUGGCCA-CACUUUUC--GAAUCCCCCAA--CGAAUGGCGGCCAUAAAAGCCGC---ACGCAUUUGACCCACA---CAUGCUGACAUGGGGCCUCGG------------CCCUCUUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ((((...(((((((((.-(....(((--(..........--))))..).)))))))))))))..---...((((((((((((.---.(((((((...(((((....)------------)))).)))))))...((....))..)))))).....)))))). ( -49.90, z-score = -2.73, R) >dp4.chrXR_group5 548105 149 + 740492 GGUUCUAUUUAUGGUCA-CACUUUUUUAAAAUACAACAAAAUAAAUGGAGACCAUAAAAGCCGC---ACGCAUUUGACCCACA---CGGUGGGGCGGCAGCCCCUGCACUCUUCUUUUCUCUCUUUUGCAUAUGGUCUAUUCAGGUGGGUGUGUCC------ ((((...(((((((((.-((.((.(((...........))).)).))..)))))))))))))((---((.(((((((.(((..---....(((((....)))))((((..................))))..))).....))))))).))))....------ ( -39.27, z-score = -0.91, R) >droPer1.super_67 136302 149 - 321716 GGUUCUAUUUAUGGUCA-CACUUUUUUAAAAUACAACAAAAUAAAUGGAGACCAUAAAAGCCGC---ACGCAUUUGACCCACA---CGGUGGGGCGGCAGCCCCUGCACUCUUCUUUUCUCUCUUUUGCAUAUGGUCUAUUCAGGUGGGUGUGUCC------ ((((...(((((((((.-((.((.(((...........))).)).))..)))))))))))))((---((.(((((((.(((..---....(((((....)))))((((..................))))..))).....))))))).))))....------ ( -39.27, z-score = -0.91, R) >droWil1.scaffold_181024 265502 136 - 1751709 GGUUCUAUUUAUGGCCAGCAAAAACC-----GCCAACAAAAUGAAUGGCGGUCAUAAAAACUGCCUCACGCAGUUGACCCAUAGAUUAUGUAGGCGUGAGGGUGCAC--------------------ACACAUAAACAUUCUAUAUGUGUGUGCUCAUUGG- ((((...(((((((((.(......).-----((((..........))))))))))))))))).((((((((...(((........))).....))))))))(.((((--------------------(((((((.........))))))))))).).....- ( -44.20, z-score = -2.66, R) >consensus GGUUCUAUUUAUGGCCA_CACUUUUC__AAAUCCCCCAA__CGAAUGGCGGCCAUAAAAGCCGC___ACGCAGUUGACCCACA___CAUGCUGACAUGGGGCCUCGG____________CCCUCUUAGCAUAUAGAUUAUUCAGGUGGGUGUGUCCAAAUGG ((((...(((((((((.................................))))))))))))).....((((.....((((((.....(((((((..............................)))))))...(......)..))))))))))........ (-21.64 = -21.22 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:01 2011