| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,058,179 – 9,058,282 |
| Length | 103 |
| Max. P | 0.611958 |
| Location | 9,058,179 – 9,058,282 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 63.95 |
| Shannon entropy | 0.60671 |
| G+C content | 0.30859 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -7.77 |
| Energy contribution | -7.83 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9058179 103 - 24543557 --------AAAUACUA-GGCAGGUGCCUCAAAUAUUUCAUAUAAAGAAACUUUCAUUUAUAACUUUUUAAUUGAGGCAAACUUUAAUAAUGUUGGCGUUAGUAGGCUUCAAU --------...(((((-(((...((((((((.((.....((((((((.....)).))))))......)).))))))))(((.........))).)).))))))......... ( -19.60, z-score = -1.34, R) >droSim1.chr3L 8496733 99 - 22553184 AUAAACGAGACCAGUAUUACAGGUGCCACAGAUA----------AAAAACUUUCAUUUACGUCUUUCUAAUUGAGGCAA---CUAAGUUUUUUGUUGCAAAUUGGGGUUAAA ........((((.((((.....))))....((((----------((((((((........(((((.......)))))..---..)))))))))))).........))))... ( -16.80, z-score = 0.07, R) >droSec1.super_0 1328560 97 - 21120651 AUAUACAAGACCAGUAUAACAGGUGCCUCAAAUAUUUCAGAUAAAGAAACUUUCAUAUAUGUCUUUCUAAUUGAGGCAA---GUAA-UUAUUUGUUGCAAA----------- .(((((.......))))).....((((((((.((....(((((................)))))...)).)))))))).---((((-(.....)))))...----------- ( -17.49, z-score = -1.27, R) >droYak2.chr3L 21345147 109 + 24197627 AUGUACGGAAACAGUAUUACAGGUGCCUCAAAUAUUUCUGAUGCAUAGACUUCUAUUAAUAAUUUUCUAAUUGAGGCAA---CAAAGUUAUUUGUUGCAAAUUGGUAGAAGG ..(((((....).)))).....((((.(((........))).))))...(((((((((((....(((.....)))((((---((((....))))))))..))))))))))). ( -29.90, z-score = -3.59, R) >consensus AUAUACGAAAACAGUAUUACAGGUGCCUCAAAUAUUUCAGAUAAAGAAACUUUCAUUUAUAACUUUCUAAUUGAGGCAA___CUAAGUUAUUUGUUGCAAAUUGG__U_AA_ .......................((((((((.((.................................)).)))))))).................................. ( -7.77 = -7.83 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:50 2011