| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,042,531 – 9,042,651 |
| Length | 120 |
| Max. P | 0.821615 |
| Location | 9,042,531 – 9,042,651 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.25 |
| Shannon entropy | 0.29247 |
| G+C content | 0.58278 |
| Mean single sequence MFE | -42.22 |
| Consensus MFE | -28.43 |
| Energy contribution | -28.49 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9042531 120 - 24543557 GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCAUCCAACAAGGCCAAGCUGGAGGAGGUUGCCGCCAAGUACAAC (((....(((((((((.((.........((((((((.......((((......)))).....))))))))(((((((..........))).)))))))))))))))..)))......... ( -42.20, z-score = -0.97, R) >droSim1.chr3L 8481012 120 - 22553184 GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCCAAGCUUGAGGAGGUUGCCGCCAAGUACAAC (((....(((((((((.............(((((((.......((((......)))).....)))))))((((((((((......))))).))))).)))))))))..)))......... ( -45.50, z-score = -2.49, R) >droSec1.super_0 1312957 120 - 21120651 GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCCAAGCUUGAGGAGGUUGCCGCCAAGUACAAC (((....(((((((((.............(((((((.......((((......)))).....)))))))((((((((((......))))).))))).)))))))))..)))......... ( -45.50, z-score = -2.49, R) >droYak2.chr3L 21329230 120 + 24197627 GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGUUGGCCUCCAACAAGGCCAAGCUGGAGGAGGUUGCCGCCAAGUACAAC (((..(((..(((((.((......(((.((((((((.......((((......)))).....)))))))).)))(((((......)))))..)).))))))))..)))............ ( -47.10, z-score = -2.41, R) >droEre2.scaffold_4784 20767201 120 + 25762168 GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCUAAGCUGGAGGAGGUUGCCGCCAAGUACAAC (((....(((((((((.((.........((((((((.......((((......)))).....))))))))(((((((((......))))).)))))))))))))))..)))......... ( -45.20, z-score = -1.86, R) >droAna3.scaffold_13337 20886350 120 - 23293914 GGCUUCCUGACCUUCUGCCCCACCAACUUGGGCACCACCAUCCGCGCCUCCGUGCACAUCAAGGUCCCCAAGCUGGCCUCCAACAAGGCCAAGCUGGAGGAGGUCGCCGCCAAGUACAAC ((((((((((((((.(((((.........))))).........((((....)))).....)))))).(((.((((((((......))))).))))))))))))))............... ( -46.20, z-score = -2.70, R) >dp4.chrXR_group5 479048 120 - 740492 GGUUUCUUGACCUUCUGCCCCACCAACUUGGGCACCACCAUCCGUGCAUCCGUGCACAUCAAGGUCCCUAAAUUGGCCUCUAACAAGGCCAAGCUCGAGGAAGUUGCCGCCAAGUACAAC (((..(((((((((.(((((.........))))).........(((((....)))))...))))))(((...(((((((......))))))).....))))))..)))............ ( -40.80, z-score = -3.18, R) >droPer1.super_67 68150 120 + 321716 GGUUUCUUGACCUUCUGCCCCACCAACUUGGGCACCACCAUCCGUGCAUCCGUGCACAUCAAGGUCCCUAAAUUGGCCUCUAACAAGGCCAAGCUCGAGGAAGUUGCCGCCAAGUACAAC (((..(((((((((.(((((.........))))).........(((((....)))))...))))))(((...(((((((......))))))).....))))))..)))............ ( -40.80, z-score = -3.18, R) >droWil1.scaffold_181024 1033886 120 - 1751709 GGUUUCUUGACUUUCUGCCCCACCAACUUGGGUACCACCAUCCGUGCCUCCGUGCACAUUAAGGUCCCCAAGCUGGCCGCCAACUUGGCCAAGUUGGAGGAGGUCGCCGGCAAGUACAAC .((..((((.((..(.(((((.((((((((((.(((.......((((......)))).....))).)))))..((((((......)))))).))))).)).))).)..)))))).))... ( -41.70, z-score = -1.02, R) >droVir3.scaffold_13049 23558600 120 + 25233164 GGCUUCUUGACCUUCUGCCCCACCAAUCUGGGCACCACCAUCCGUGCCUCUGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCCAAGCUCGAGGAAGUCGCUGCCAAAUACAAU (((....((((.((((............((((((((.......((((......)))).....))))))))(((((((((......))))).))))..)))).))))..)))......... ( -43.40, z-score = -2.99, R) >droMoj3.scaffold_6654 2144261 120 - 2564135 GGCUUCUUGACCUUCUGCCCCACCAACUUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCCAAGCUCGAGGAAGUCGCUGCCAAAUACAAU (((....((((((((.((........((((((((((.......((((......)))).....)))))))))).((((((......)))))).))..))))..))))..)))......... ( -44.20, z-score = -3.34, R) >droGri2.scaffold_15110 21802104 120 + 24565398 GGUUUCUUGACCUUCUGCCCCACCAAUUUGGGCACAACCAUUCGUGCCUCGGUGCACAUUAAGGUGCCCAAGCUGGCCGCCAACAAGGCCAAGCUGGAGGAGGUCGCCGGCAAAUACAAU (((.....((((((((.((.........(((((((........((((......))))......)))))))((((((((........)))).)))))))))))))))))............ ( -46.24, z-score = -1.88, R) >anoGam1.chr2L 31365301 120 + 48795086 GGCUUCCUGACCUUCUGCCCGACCAACCUUGGCACCACCAUCCGCGCCUCGGUCCACAUCAAGGUGCCGAAGCUGGCCAAGGACUACGCGAAGCUGGAGGCGACCGCCGACAAGUACAAC (((....((.(((((.((.((.....(((((((..((.(.((.((((((.(((....))).)))))).)).).)))))))))......))..)).)))))))...)))............ ( -38.50, z-score = -0.52, R) >apiMel3.GroupUn 391213105 120 + 399230636 GGUUUCCUGACUUUCUGCCCGACUAACUUGGGCACUACAGUCCGUGCUUCUGUGCACAUCAAGCUGCCUAAAUUAGCCGCCAACAGGGCAAAACUUGAGGAAAUCGCAGGGAAAUUCAAU ..(((((((......(((((((.....)))))))......(((((((......)))).(((((.(((((................)))))...)))))))).....)))))))....... ( -36.79, z-score = -1.70, R) >triCas2.ChLG5 7851147 120 - 18847211 GGGUUCCUCACUUUCUGCCCCACCAACCUUGGGACAACUGUUCGUGCCUCCGUUCACAUCAAAGUUCCCAAACUGGCCGCCAACAAGGCCAAGUUGGACGAAGUCGCUGCCAAAUUCAAU ((((............))))..(((((.((((((..(((....(((........))).....)))))))))..(((((........))))).)))))....................... ( -29.20, z-score = 0.03, R) >consensus GGUUUCCUGACCUUCUGCCCCACCAACCUGGGCACCACCAUCCGUGCCUCCGUGCACAUCAAGGUGCCCAAGCUGGCCUCCAACAAGGCCAAGCUGGAGGAGGUCGCCGCCAAGUACAAC (((..(((.(((((.(((((.........))))).........((((......))))...))))).(((.((((((((........)))).)))).).)))))..)))............ (-28.43 = -28.49 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:48 2011