| Sequence ID | dm3.chr2L |
|---|---|
| Location | 518,190 – 518,283 |
| Length | 93 |
| Max. P | 0.965641 |
| Location | 518,190 – 518,283 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.47 |
| Shannon entropy | 0.52057 |
| G+C content | 0.49858 |
| Mean single sequence MFE | -29.13 |
| Consensus MFE | -7.76 |
| Energy contribution | -9.11 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.31 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 518190 93 + 23011544 CCUAACGAGGAAGUGAACUACCCAAUUCGUUACAGUCUGCGAAU------UGGCAGUCACUUCC--UCGCAAAUUGAU---CCGAUCAAGCAGGCACCCA------AAAG ......((((((((((.((..(((((((((........))))))------))).))))))))))--))((...(((((---...)))))....)).....------.... ( -34.70, z-score = -5.99, R) >droPer1.super_1 7720741 107 - 10282868 AUCCGAGUGUAAGUGUAUC-CCUAAUUCGUCACAUCCCUCGGUUAUUCCUUUCCUCCCACUUCUGAUUGCCAAUUGAGGCGCUGAUCAAGUAGUCAGGCACC--CAAAAG ..(((((.(...(((....-..........)))..).)))))...................((((((((((......)))(((.....))))))))))....--...... ( -19.24, z-score = -0.41, R) >dp4.chr4_group3 10607723 107 - 11692001 AUCCGAGUGUAAGUGUAUC-CCUAAUUCGUCACAUCCUUCGGUUAUUCCUUUCCUCCCACCUCUGAUUGCCAAUUGAGGCGCUGAUCAAGUAGUCAGGCACC--CAAAAG ..(((((.(...(((....-..........)))..).)))))...................((((((((((......)))(((.....))))))))))....--...... ( -17.04, z-score = 0.38, R) >droAna3.scaffold_12943 326952 104 - 5039921 AAUAAUUAAGAGGGGUAUCUUCAAAUUCGUCACAGUCUGGGUCUCUG---UGGCAGCCACUUCC--CUGCCACUUGAGA-GCCGAUCAAGCCGGCGCCCACCUUCAAAAG .........((((((......)...............((((((((.(---((((((........--)))))))..))))-((((.......)))).)))))))))..... ( -33.40, z-score = -2.18, R) >droEre2.scaffold_4929 573082 93 + 26641161 CCCAACGAGGAAGUGUAUUGCCCAAUUCGUUACAGUCUGCGAAC------UGGCAGCCACUUCC--UCGCCAAUUGAG---CCGAUCAAGCAGGCACCCA------GAAG ......(((((((((..(((((...(((((........))))).------.))))).)))))))--))(((..((((.---....))))...))).....------.... ( -33.70, z-score = -4.29, R) >droYak2.chr2L 504776 93 + 22324452 CCUAACGAGGAAGUGUACCAAACAAUUCGUCACAGUCUGCGAAU------UGGAAGCCACUUCC--UCGCCAAUCAAG---CUGAUCAAGCAGGCACCCA------AAAG (((..((((((((((.......((((((((........))))))------)).....)))))))--)))........(---((.....))))))......------.... ( -29.80, z-score = -4.33, R) >droSec1.super_14 500847 93 + 2068291 CCUAACGAGGAAGUGAACUAAACAAUUCGUUACAGUCUGCGAAU------UGGCAGCCACUUCC--UCGCCAAUUGAG---CCGAUCAAGCAGGCACCCA------AAAG ......(((((((((..((...((((((((........))))))------))..)).)))))))--))(((..((((.---....))))...))).....------.... ( -32.60, z-score = -4.85, R) >droSim1.chr2L 526454 93 + 22036055 CCUAACGAGGAAGUGAACUAAACAAUUCGUUACAGUCUGCGAAU------UGGCAGCCACUUCC--UCGCCAAUUGAG---CCGAUCAAGCAGGCACCCA------AAAG ......(((((((((..((...((((((((........))))))------))..)).)))))))--))(((..((((.---....))))...))).....------.... ( -32.60, z-score = -4.85, R) >consensus CCUAACGAGGAAGUGUACCACCCAAUUCGUCACAGUCUGCGAAU______UGGCAGCCACUUCC__UCGCCAAUUGAG___CCGAUCAAGCAGGCACCCA______AAAG ........(((((((...........((((........))))...............)))))))....(((..((((........))))...)))............... ( -7.76 = -9.11 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:02 2011