| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,961,555 – 8,961,701 |
| Length | 146 |
| Max. P | 0.835569 |
| Location | 8,961,555 – 8,961,701 |
|---|---|
| Length | 146 |
| Sequences | 5 |
| Columns | 147 |
| Reading direction | forward |
| Mean pairwise identity | 88.23 |
| Shannon entropy | 0.20921 |
| G+C content | 0.50679 |
| Mean single sequence MFE | -47.15 |
| Consensus MFE | -35.52 |
| Energy contribution | -35.80 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8961555 146 + 24543557 -UUUGUUAGUGGCAAUAACGGUUCAUAGGCAAAACGCAGUGUGGUAGUGGACGCCACAACAAAGCUUUCCGGCUCAGUGAGCGACGGGCACACUGGCACAAAGCACAAAACAGAACAGUCGGUCGGAAACGGAAUCGAAAAGAAAGA -((((((.(((((....((...(((((.((.....))..)))))..))....)))))))))))(((((...((.(((((.((.....)).)))))))..)))))..............(((((((....))..)))))......... ( -44.20, z-score = -2.18, R) >droSim1.chr3L 8398849 147 + 22553184 UUACGUUAGUGGCAAUAACGGUUCAUAGCCGAAACGCAGUGUGAUAGUGCUCACCACAACUGAGCUUUCCGGCUCAGUGAGGGACGGGCACACUGUCGCAAAGCACAAAACAGAACAGUCGCACGGAAACGGAAUCGAAAAGAAAGA ...((...(((((.....((((.....))))....((..(((((((((((((.((...((((((((....))))))))...))..))))..)))))))))..)).............))))).((....))....)).......... ( -50.90, z-score = -3.49, R) >droSec1.super_0 1232220 147 + 21120651 UUUCGUUAGUGGCUAUAACGGUUCAUAGCCGAAACGCAGUGUGAUAGUGCUCACCACAACUGAGCUUUCCGGCUCAGUGAGGGACGGGCACACUGCCGCAAAGCACAAAACAGAACAGUCGGACGGAAACGGAAUCGAAAAGAAAGA (((((((..(((((((........))))))).)))((..((((...((((((.((...((((((((....))))))))...))..)))))).....))))..))..............((((.((....))...))))...)))).. ( -47.50, z-score = -2.18, R) >droYak2.chr3L 21245654 147 - 24197627 UUUCGAAAAUGGCAAUAACGGUGCAUAGCCGAAACGCAGUGUGGUAGUGCCUAGUCCAGCUGAGCUUUAGGGCCCAGCAAGCGACGGGCACACUGGCGCAAAGCACAAAACAGAACAGUCGGACGGAAACGGAAUCGCAAAGAAAGA .(((((...((.........((((...((......)).(((((((.((((((.((((.((((.(((....))).))))..).)))))))))))).))))...)))).........)).)))))((....))................ ( -43.87, z-score = -0.61, R) >droEre2.scaffold_4784 20682299 147 - 25762168 CUUUAAAAGCGGCAAUAACGGUUCAUAGCCGAAACGCAGUGUGGUAGUGCUUACCGCAGCUGAGCUUUCUGGCUCAGCAAGCGACGGGCACACUGGCGCAAAGCACAAAACAGAACAGUCGGACGGAAACGGAAUCGAAGAGAAAGA ((((.....((((.....((((.....))))....((..((((.((((((((..(((.((((((((....))))))))..)))..))))..)))).))))..)).............))))..((....)).....))))....... ( -49.30, z-score = -2.25, R) >consensus UUUCGUUAGUGGCAAUAACGGUUCAUAGCCGAAACGCAGUGUGGUAGUGCUCACCACAACUGAGCUUUCCGGCUCAGUGAGCGACGGGCACACUGGCGCAAAGCACAAAACAGAACAGUCGGACGGAAACGGAAUCGAAAAGAAAGA ..................((((((...........((..((((.((((((((.((...((((((((....))))))))..))...))))..)))).))))..))...................((....)))))))).......... (-35.52 = -35.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:43 2011