| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,935,039 – 8,935,108 |
| Length | 69 |
| Max. P | 0.604764 |
| Location | 8,935,039 – 8,935,108 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 87.97 |
| Shannon entropy | 0.20590 |
| G+C content | 0.37649 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -13.04 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8935039 69 - 24543557 ACAAUAUGCAAAAUGUCUGACAUUUGUAUGCUAGCCAUUUCUUACGACACAAU-----UG--------GUAAGAGAUCGCUU ....((((((((.((.....))))))))))..(((.(((((((((.(......-----).--------))))))))).))). ( -17.40, z-score = -2.61, R) >droEre2.scaffold_4784 20655316 82 + 25762168 ACAAUAUGCAAAAUGUCUGACAUUUGUAUGCGAGCCAUUUCUUAUGCCACAAUUGUUGUGGUGUUCGAGUAAGAGAUCGGUU ....((((((((.((.....))))))))))..(((((((((((((((((((.....))))))......))))))))).)))) ( -22.70, z-score = -1.90, R) >droYak2.chr3L 21218595 77 + 24197627 ACAAUAUGCAAAAUGUCUGACAUUUGUAUGCGAGCCAUUUCUUACGCCACAAU-----UGGUGUCCGAGUAAGAGAUCGGUU ....((((((((.((.....))))))))))..(((((((((((((((((....-----))))......))))))))).)))) ( -19.60, z-score = -1.50, R) >droSec1.super_0 1205277 77 - 21120651 ACAAUAUGCAAAAUGUCAGACAUUUGUAUGCUAGCUAUUUCUUACGACACAAU-----UGGUGUCUGAGUAAGAGAUCGCUU ....((((((((.((.....))))))))))..(((.((((((((((((((...-----..)))))...))))))))).))). ( -23.10, z-score = -3.09, R) >droSim1.chr3L 8371784 77 - 22553184 ACAAUAUGCAAAAUGUCUGACAUUUGUAUGCUAGCUAUUUUUUACGACACAAU-----UGGUGUCUGAGUAAGAGAUCGCUU ....((((((((.((.....))))))))))..(((.((((((((((((((...-----..)))))...))))))))).))). ( -20.50, z-score = -2.43, R) >consensus ACAAUAUGCAAAAUGUCUGACAUUUGUAUGCUAGCCAUUUCUUACGACACAAU_____UGGUGUCCGAGUAAGAGAUCGCUU ....((((((((.((.....))))))))))..(((.(((((((((..(((..........))).....))))))))).))). (-13.04 = -13.72 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:39 2011