| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,924,032 – 8,924,085 |
| Length | 53 |
| Max. P | 0.992745 |
| Location | 8,924,032 – 8,924,085 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 74.12 |
| Shannon entropy | 0.54159 |
| G+C content | 0.47494 |
| Mean single sequence MFE | -15.01 |
| Consensus MFE | -8.53 |
| Energy contribution | -10.04 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.992745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8924032 53 + 24543557 ACGAUAUGCGUCUGUAAAUCGGAGAUGACGAGGACAGCGGAUGUUGUGACAGU (((((((.((.((((...(((.......)))..)))))).)))))))...... ( -17.80, z-score = -3.01, R) >droSim1.chr3L 8360592 53 + 22553184 ACGAUAUGCGUCUGUAAAUCGGAGAUGACGAGGACAGCGGAUGUUGUGACAGU (((((((.((.((((...(((.......)))..)))))).)))))))...... ( -17.80, z-score = -3.01, R) >droSec1.super_0 1194384 53 + 21120651 ACGAUAUGCGUCUGUAAAUCGGAGAUGACGAGGACAGCGGAUGUUGUGACACU (((((((.((.((((...(((.......)))..)))))).)))))))...... ( -17.80, z-score = -3.04, R) >droYak2.chr3L 21207669 53 - 24197627 ACGAUAUGCGUCUGUAAAUCGGAGACGACGAUGACAGCGGAUGUUGUGACAGU (((((((.((.((((...(((....))).....)))))).)))))))...... ( -19.00, z-score = -3.05, R) >droEre2.scaffold_4784 20644092 53 - 25762168 ACGAUAUGCGUCUGUAAAUCGGAGAUGACGAUGACAGCGGAUGUUGUGACAGU (((((((.((.((((..((((.......)))).)))))).)))))))...... ( -17.20, z-score = -2.60, R) >droWil1.scaffold_180698 3543868 50 - 11422946 ACGAUAUGCGUCUGUAAAU-GACCCCAAAGCAAACCGAGGAA--UGAAUCAAU .((...((((((.......-)))......)))...)).....--......... ( -3.10, z-score = 0.96, R) >anoGam1.chr2L 44800686 51 - 48795086 GAGGAAUGCGAUUGUAGGUUUGUAUCG--UGAAGCGAAGCACGAUGCUACAGU ..........((((((.....((((((--((........)))))))))))))) ( -12.40, z-score = -1.06, R) >consensus ACGAUAUGCGUCUGUAAAUCGGAGAUGACGAGGACAGCGGAUGUUGUGACAGU (((((((.((.((((...(((.......)))..)))))).)))))))...... ( -8.53 = -10.04 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:38 2011