| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,917,547 – 8,917,639 |
| Length | 92 |
| Max. P | 0.672440 |
| Location | 8,917,547 – 8,917,639 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 61.26 |
| Shannon entropy | 0.63726 |
| G+C content | 0.52393 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -13.55 |
| Energy contribution | -11.80 |
| Covariance contribution | -1.75 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8917547 92 + 24543557 UUUGGGUGGGCUAAAAAACAGGGGGCGGUAUGCGGGCUAAAGUGGGGAAUGUGGCGCCCACAGAAACUCGGCUUAUGUGAAUAUGUACACAU------ .....(((..(......(((..((.((((.((.((((....((.....)).....)))).))...)).)).))..)))......)..)))..------ ( -22.60, z-score = 0.27, R) >droYak2.chr3L 21201308 97 - 24197627 UUUGUGCGGCUUAAAA-CGGGGGGGAGGCAAAGGGGCUGAAGUGGGGAAUGUGGCGCCCACAGAAACUCGGCUUAUGUGAAUAUAUGUACAUACAAGU ..((((((((((....-(....)..))))....(((((((.((......(((((...)))))...)))))))))...........))))))....... ( -21.70, z-score = 0.73, R) >droEre2.scaffold_4784 20637764 91 - 25762168 UUGGGGUGGCUUAAA--ACGGGUGGUUGUA-GGGGGCUACAGUGGGGAAUGUGGCGCCCACAGAAACUCGGCCUAUGUGAAUAUGUACAUAUGU---- .......(((.....--.(((((..((((.-(((.((((((........)))))).)))))))..))))))))((((((......))))))...---- ( -31.80, z-score = -2.26, R) >droPer1.super_568 2794 87 + 11542 -----GGAAAAGGAGUUGUGGGUGGUGCAGGGCGGAGUGGGAGUGGGAGUGCGGCGCCCGCAAUGUUCUGACUUGUGUAAAUCUCUUUGCAU------ -----....((((((...((.(..(..(((((((..(((((.((.(.....).)).)))))..)))))))..)..).))...))))))....------ ( -29.40, z-score = -1.75, R) >consensus UUUGGGUGGCUUAAAA_ACGGGGGGUGGUA_GCGGGCUAAAGUGGGGAAUGUGGCGCCCACAGAAACUCGGCUUAUGUGAAUAUGUACACAU______ .................................((((((.(((......(((((...)))))...)))))))))(((((........)))))...... (-13.55 = -11.80 + -1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:37 2011