| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,637,947 – 4,638,057 |
| Length | 110 |
| Max. P | 0.671647 |
| Location | 4,637,947 – 4,638,057 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 85.39 |
| Shannon entropy | 0.25596 |
| G+C content | 0.41627 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -22.82 |
| Energy contribution | -23.34 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4637947 110 - 23011544 ACCUCU-GUUAGCUGUAGGGCAGUUCAUGUAUCUUAAGUCUGGUCUAGACUAAAAGUCAUUAUGCCUGGCCUGCAGCUGACUUUUUAAACGGGCUGCUAUUGUUUUAAAAA ......-((((((((((((.(((..((((...(((.((((((...))))))..)))....)))).))).))))))))))))((((.((((((.......)))))).)))). ( -35.50, z-score = -2.95, R) >droSim1.chr2L_random 253276 111 - 909653 ACCUCUAAUUAGCUGUAGGGCAGUUCAUGUAUCUUAAGUCUGGUCUAGACUGAAAGUCAUUAUGCCUGGCCUGCAGCUGGCUUUUUAAACGGGCUGCUAUUGUUUCAAAAA ........(((((((((((.(((..((((...(((.((((((...))))))..)))....)))).))).))))))))))).((((.((((((.......)))))).)))). ( -33.10, z-score = -1.62, R) >droSec1.super_5 2723040 111 - 5866729 ACCUCUAAUUAGCUGUAGGGCAGUUCAUGUAUCUUAAGUCUGGUCUAGACUGAAAGUCAUUAUGCCUGGCCUGCAGCUGGCUUUUUAAACGGGCUGCUAUUGUUUUUAAAA ........(((((((((((.(((..((((...(((.((((((...))))))..)))....)))).))).))))))))))).(((..((((((.......))))))..))). ( -32.80, z-score = -1.54, R) >droYak2.chr2L 4652803 111 - 22324452 UCCUCUAAUUAGCUGUAGGGCAGUUCAUAUAUCUUAAGUCUAGUCUAGACUGAAAGCCAUUAUAUCUAGCCUGCAGCUGGCUCUUAAAGCGGGCUGCUAAUGUUUUGGAAA (((....((((((.(((((..((...(((((.(((.((((((...))))))..)))....)))))))..)))))((((.(((.....))).)))))))))).....))).. ( -31.90, z-score = -0.79, R) >droEre2.scaffold_4929 4718872 100 - 26641161 ----------ACCUCUA-AUUAGUUCAUGUAUCUUAUGUCUAGUCUAGACCGAAAGUCAUUAUACCUAGCCUGCAGCUGGCUCUUAAAGCGGGCUGCUAAUGUUUCGGAAA ----------...((((-(((((..((((.....)))).))))).))))((((((..(((((..........((((((.(((.....))).)))))))))))))))))... ( -29.30, z-score = -2.57, R) >consensus ACCUCUAAUUAGCUGUAGGGCAGUUCAUGUAUCUUAAGUCUGGUCUAGACUGAAAGUCAUUAUGCCUGGCCUGCAGCUGGCUUUUUAAACGGGCUGCUAUUGUUUUAAAAA ..........(((((((((.(((.....((..(((.((((((...))))))..)))..)).....))).)))))))))(((((.......)))))................ (-22.82 = -23.34 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:03 2011