| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,877,912 – 8,878,003 |
| Length | 91 |
| Max. P | 0.523474 |
| Location | 8,877,912 – 8,878,003 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 85.38 |
| Shannon entropy | 0.25881 |
| G+C content | 0.40404 |
| Mean single sequence MFE | -13.06 |
| Consensus MFE | -9.98 |
| Energy contribution | -10.98 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8877912 91 + 24543557 UUUAUUUGAUCUCCAAAUUCUACCCUUGAUCUGUCGCACCAAAAACUAUUUUGAUGUGAAACCCCAAAAAAUUGAUGAUCCUCUUCUGAAC .......((((..(((..((.......))....(((((.(((((....))))).)))))............)))..))))........... ( -11.50, z-score = -2.20, R) >droSim1.chr3L 8312692 91 + 22553184 UUUAUGUGAUCUCCCAGAUCUACCCUUGAUCUGUCGCACCAAAAACUAUUUUGAUGUGAGGCCCCAACAAAUUGAUGAUCCUCUUCUGAAC .......((((((.((((((.......))))))(((((.(((((....))))).)))))..............)).))))........... ( -18.00, z-score = -2.29, R) >droSec1.super_0 1148560 91 + 21120651 UUUAUGUGAUCACCCAGAUCUACCCUUGAUCUAUCGCACCAAAAACAAUUUUGAUGUGAAGCCCCAACAAAUUGAUGAUCCUCUUCUGAAC .......(((((...(((((.......))))).(((((.(((((....))))).)))))................)))))........... ( -16.50, z-score = -2.76, R) >droYak2.chr3L 21161820 91 - 24197627 UUUAUGUGAUCUUUAAGAGCAACCCUUGAUCUGUCACCCCAAAAACUAUUUUAAUGUGAAACCCCGCCAAAUUGAUGAUCCUCUGCUGAAC .....(((((..(((((.......)))))...))))).............((((((((......)))...)))))................ ( -7.70, z-score = 0.13, R) >droEre2.scaffold_4784 20596912 87 - 25762168 ----UAAGAUCUCCAAGAUCUACCCCUGGACUGUCACACCAGAAACUAUUUUGAUGCGAAGCCCCACCAAAUUGAUGAUCCUCUGCUGAAC ----..(((((.....))))).....(((....((.((.(((((....))))).)).))....)))......................... ( -11.60, z-score = -0.23, R) >consensus UUUAUGUGAUCUCCAAGAUCUACCCUUGAUCUGUCGCACCAAAAACUAUUUUGAUGUGAAGCCCCAACAAAUUGAUGAUCCUCUUCUGAAC .......((((....(((((.......))))).(((((.(((((....))))).))))).................))))........... ( -9.98 = -10.98 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:33 2011