| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,873,118 – 8,873,216 |
| Length | 98 |
| Max. P | 0.786321 |
| Location | 8,873,118 – 8,873,216 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 71.90 |
| Shannon entropy | 0.57903 |
| G+C content | 0.51813 |
| Mean single sequence MFE | -33.81 |
| Consensus MFE | -14.72 |
| Energy contribution | -15.99 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8873118 98 - 24543557 UUUGU--UUAAAGGGGCAAAAGUUGUGCAGGCAUAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCUGCACACAAGAGGGGGUGGGGG------- (((((--....((((((....((((((....)))))).((..((((((((...........))))))))..))))))))....)))))............------- ( -34.70, z-score = -1.85, R) >droSim1.chr3L 8307516 100 - 22553184 UUUGUUUUUAAAGGGGCAAAAGUUGUGCAGGCAGAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCAGCCCACAAGAGGGGUAGGGGG------- ((((((((....))))))))....((((..((...)).....((((((((...........)))))))))))).((((.((((.......)))).)))).------- ( -35.20, z-score = -1.65, R) >droSec1.super_0 1143771 100 - 21120651 UUUGUUGUUAAAGGGGCAAAAGUUGUGCAGGCAUAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCAGCCCACAAGAGGGGUAGGGGG------- ............(((((....((((((....)))))).((..((((((((...........))))))))..))))))).((((.......))))......------- ( -36.10, z-score = -1.79, R) >droYak2.chr3L 21156827 105 + 24197627 UUUGC--UUAAAGGGGCAAAAGUUGUGCUGGCAGAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCUGCCCACAAAAGGGGUGUCAAAAGGGGGG (((.(--((..((((((....(((.((....)).))).((..((((((((...........))))))))..))))))))((((.......)))).....))).))). ( -35.90, z-score = -0.33, R) >droEre2.scaffold_4784 20592316 90 + 25762168 UUUGU--UUAAAGGGGCAAAAGUU-UGCUGGCAGAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCUGCCCAUAAAAAGGG-------------- .....--....((((((......(-(((((......))))))((((((((...........))))))))....)))))).(((.......)))-------------- ( -31.70, z-score = -1.61, R) >droAna3.scaffold_13337 15518985 90 + 23293914 UUUGU--UUAAAGGGGCAAAAGUUGUGCUGGCAGAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCAGGCACACGCCCCUGCCC-CAUCAUGGG-------------- .....--.....((((((((((((((((((((..........))))))))....))))))).....(((....)))...))))-)........-------------- ( -29.80, z-score = -0.89, R) >droWil1.scaffold_180698 3481164 78 + 11422946 --------------------UUUUUUUUGUGCC-AGCAGUAAGUCAGCAUUUGGAACUUUUAUGCAGGCGCACGCCCAUCUCUAGGGGGGAGGCGGGGG-------- --------------------.......((((((-.(((..(((((........).))))...))).))))))(.(((..((((.....))))..))).)-------- ( -26.00, z-score = -1.48, R) >droVir3.scaffold_13049 6558289 101 - 25233164 UGUGUGUGUGUGUGGCAGCCAGCCAAACGGGCUGAUCAGUAAGUCAGCAUUUGGAAGUUUUAUGCAGGCACACGCCGAAGUGCAGGCAAGAAACGGCUGCG------ ..............((((((..(((((...((((((......)))))).)))))..(((((.(((..((((........))))..))).))))))))))).------ ( -41.10, z-score = -2.36, R) >consensus UUUGU__UUAAAGGGGCAAAAGUUGUGCAGGCAGAGCAGUAAGUCAGCAUUUGGAACUUUUAUGCUGGCGCACGCCCCUGCCCACAAGAGGGGUGGGGG________ ............(((((....(((.((....)).))).((..(((.((((...........)))).)))..)))))))..(((.......))).............. (-14.72 = -15.99 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:32 2011