| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,864,167 – 8,864,268 |
| Length | 101 |
| Max. P | 0.912513 |
| Location | 8,864,167 – 8,864,268 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.85 |
| Shannon entropy | 0.37041 |
| G+C content | 0.49574 |
| Mean single sequence MFE | -33.85 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8864167 101 + 24543557 UCAUUUGCUGGGCGCCCAGUUGUAUAAUUUGCAAUUGUUUGUUGUUGGCUUGCCCUGCGAAUGG-GAAUGCGAAUGUGUUGCUGCCCGGCAGCAACAUGCCC ((((((((.(((((((((((((((.....)))))))).........)))..)))).))))))))-..........((((((((((...)))))))))).... ( -41.20, z-score = -2.77, R) >droEre2.scaffold_4784 20583383 83 - 25762168 UCAUUUGCUGGGCGCCCAGUUGUAUAAUUUGCAAUGGCUUGUUGUUG-CUGGCCCUG-----------UGUGAAUGG-----UGCCCAGCAGCGACUUGC-- ....((((((((((((..((((((.....))))))((((.((....)-).))))...-----------.......))-----))))))))))........-- ( -34.00, z-score = -2.50, R) >droYak2.chr3L 21147958 99 - 24197627 UCAUUUGCUGGGCGCCCAGUUGUAUAAUUUGCAAUUGCUUGUUGUUG-CUGGCCCUGUGAAUGGUGAAUGCGAAUGUGUUGCUGCCCAGCAGCAACUUGC-- (((((..(.((((...((((...(((((..((....))..))))).)-))))))).)..))))).....((((....((((((((...))))))))))))-- ( -36.50, z-score = -2.25, R) >droGri2.scaffold_15110 18344219 79 - 24565398 UCGUUUGCUGUGCGCCCAGUUGUAUAAUUUGCAAUUGUUUGUUGUUA--UUGCCGAG------------GC-AAUGU--UGUUGCUCAUCAGCAGC------ ....((((((((.((.((((((((.....))))))))........((--((((....------------))-)))).--....)).)).)))))).------ ( -23.70, z-score = -1.80, R) >consensus UCAUUUGCUGGGCGCCCAGUUGUAUAAUUUGCAAUUGCUUGUUGUUG_CUGGCCCUG___________UGCGAAUGU__UGCUGCCCAGCAGCAACUUGC__ ....(((((((((...((((((((.....))))))))......((......))..............................))))))))).......... (-18.66 = -19.23 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:31 2011