| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,846,143 – 8,846,246 |
| Length | 103 |
| Max. P | 0.596146 |
| Location | 8,846,143 – 8,846,246 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 62.91 |
| Shannon entropy | 0.74028 |
| G+C content | 0.47356 |
| Mean single sequence MFE | -27.41 |
| Consensus MFE | -9.63 |
| Energy contribution | -9.49 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596146 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 8846143 103 - 24543557 ----GUUAAUUAAGAUGAAUGCG-UUGCGCGUUUAACGGCUUAAAUGGAACGGAAGUU--UUGGGCUCUGCGGGUG----GCAGUCUGUC-UGUCUGCUUCAGGCUUCCUACCUA ----(((..(((((.((((((((-...))))))))....)))))....)))(((((((--(..(((...(((((..----(....)..))-)))..)))..))))))))...... ( -31.40, z-score = -0.99, R) >droSim1.chr3L 8285098 104 - 22553184 ----GUUAAUUAAGAUGAAUGCG-UUGUGCGUUUAACGGCUUAAAUGGAACGGAAGUU--UUGGGCUCUGUGGGAG---GCCUGUCUGUC-UGUCUGCUUCGGGCUUCCUCACUG ----.........(.(((((((.-....))))))).)((((((....((((....)))--)))))))..(((((((---(((((...((.-.....))..))))))))).))).. ( -33.90, z-score = -2.46, R) >droSec1.super_0 1117023 103 - 21120651 ----GUUAAUUAAGAUGAAUGCG-UUGCGCGUUUAACGGCUUAAAUGGAACGGAAGUU--UUGGGCUCUGUGGCAG----GCAGGCCGUC-UGUCUGCUUCGGGCUUCCUCACUG ----.....(((((.((((((((-...))))))))....)))))..(((((....)))--))((((.(((.(((((----((((.....)-)))))))).)))))))........ ( -35.10, z-score = -1.55, R) >droYak2.chr3L 21129358 92 + 24197627 ----GUUAAUUAAGAUGAAUGCG-UUGCGCGUUUAACGGCUUAAAUGGAACGGAAGUU--CUGGGCUCCGUGGGGG----GCAGUUCGUC-UGUCUGCUGCUCC----------- ----.........(.((((((((-...)))))))).)(((((....(((((....)))--)))))))..(..(.((----((((.....)-))))).)..)...----------- ( -30.60, z-score = -1.59, R) >droEre2.scaffold_4784 20565353 95 + 25762168 ----GUUAAUUAAGAUGAAUGCG-UUGCGCGUUUAACGGCUUAAAUGGAACGGAAGUU--UCGGGCUCUGUGGGAG---CUCUGUCUGCCAGGGCUGCUCCACCA---------- ----(((..(((((.((((((((-...))))))))....))))).((((((....)))--))))))...(((((((---(((((.....))))))).).))))..---------- ( -31.90, z-score = -1.20, R) >droAna3.scaffold_13337 15494074 98 + 23293914 ----GUUAAUUAAGAUGAAUGCG-UUGCGCGUUUACCGGAUCAAAUGGAACGGAAGUUGGCUUGUGGAAGUGGAAGUCCGCCAGUCUGUC-UGCCUGCCUAACC----------- ----((((.......((((((((-...))))))))(((..((....))..)))..((.(((..(..((.((((....))))...))..).-.))).)).)))).----------- ( -27.00, z-score = -0.58, R) >dp4.chrXR_group8 483690 101 + 9212921 UACCGUUAAUUAAGAUGAAUGCGUUUGUGCGUUUAACGGCUUAAAUGGAACGGAAGU---UUG--UCUGACGAGGCG--UCUAUUUUCCUGC-CCCCUCCCCCCACCCA------ .............(.((((((((....)))))))).)(((..(((((((((....))---..(--(((....)))).--)))))))....))-)...............------ ( -20.80, z-score = -0.01, R) >droPer1.super_50 476171 102 - 557249 UACCGUUAAUUAAGAUGAAUGCGUUUGUGCGUUUAACGGCUUAAAUGGAACGGAAGU---UUG--UCUGACGAGGCG--UCUAUUUUCCUGCUUCCUUCCCCCCACCCA------ ..(((((((...(((((....)))))......))))))).......((((.((((((---..(--...((((...))--))......)..)))))))))).........------ ( -23.30, z-score = -0.71, R) >droVir3.scaffold_13049 6523066 85 - 25233164 ----GCUAAUUAAGAUGAAUGCG-UCGCGCGUUUAGCAGCUUAAAUGAUACGGAAGU---UUCG-GCUGAUGAGCAA-AUUAAAUUGACUAAAUA-------------------- ----(((........((((((((-...)))))))).(((((.....((.((....))---.)))-))))...)))..-.................-------------------- ( -19.10, z-score = -0.55, R) >droGri2.scaffold_15110 18325662 84 + 24565398 ----GCUAAUUAAGAUGAAUGCG-UUGCGCGUUUAGCAGCGUAAAUGACGCGGAAGC---UU-A-GCUGAUGAGCUG-UUUUAAUUGAGGAUAUG-------------------- ----..((((((((((...((((-((((.......))))))))......((....))---..-(-(((....)))))-)))))))))........-------------------- ( -24.20, z-score = -1.43, R) >droMoj3.scaffold_6680 4846208 86 - 24764193 ----GCUAAUUAAGAUGAAUGCG-UCGGGCAUUUAGCAGCUUAAAUGAUAUGGAAGU---UUCGCCCCGAUGAGUCA-GUUUAAUUGGGCAUGCA-------------------- ----.(((((((((.(((...((-((((((((((((....))))))).....((...---.))..)))))))..)))-.))))))))).......-------------------- ( -24.20, z-score = -1.22, R) >consensus ____GUUAAUUAAGAUGAAUGCG_UUGCGCGUUUAACGGCUUAAAUGGAACGGAAGUU__UUGGGCCCGGUGGGAG___UCCAGUUUGUC_UGUCUGCUUC_CC___________ .........(((((.((((((((....))))))))....))))).....((....)).......................................................... ( -9.63 = -9.49 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:30 2011