| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,834,884 – 8,834,939 |
| Length | 55 |
| Max. P | 0.751985 |
| Location | 8,834,884 – 8,834,939 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 87.27 |
| Shannon entropy | 0.20651 |
| G+C content | 0.49091 |
| Mean single sequence MFE | -17.78 |
| Consensus MFE | -15.34 |
| Energy contribution | -14.28 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8834884 55 - 24543557 UUUAGCCUCUCUGGGUUUUGGGGAGGCUGCCACGAUUGAAAAGGUCAUUGGGAAA ..(((((((((..(...)..)))))))))(((.((((.....))))..))).... ( -18.80, z-score = -1.79, R) >droSim1.chr3L 8273798 55 - 22553184 UUUAGCCUCUCUGGGUUUUGGGGAGGCUGCCACGAUUGAAAAGGGCAUUGGGAAA ...((((((((..(...)..))))))))(((.(.........))))......... ( -18.30, z-score = -1.45, R) >droSec1.super_0 1105690 55 - 21120651 UUUAGCCUCUCUGGGUUUUGGGGAGGCUGCCACGAUUGAAAAGGGCAUUGGGAAA ...((((((((..(...)..))))))))(((.(.........))))......... ( -18.30, z-score = -1.45, R) >droAna3.scaffold_13337 15483782 55 + 23293914 UUUAGCUUGCUUGGAUUUUGGGCAAGCAACCCCGAUUGAAAAGGGCAUUACGGAA ....(((((((..(...)..)))))))...(((.........))).......... ( -15.70, z-score = -1.38, R) >consensus UUUAGCCUCUCUGGGUUUUGGGGAGGCUGCCACGAUUGAAAAGGGCAUUGGGAAA ..(((((((((..(...)..))))))))).......................... (-15.34 = -14.28 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:28 2011