| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,824,194 – 8,824,295 |
| Length | 101 |
| Max. P | 0.535832 |
| Location | 8,824,194 – 8,824,295 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.18 |
| Shannon entropy | 0.21450 |
| G+C content | 0.39508 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -20.77 |
| Energy contribution | -19.92 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8824194 101 - 24543557 ----CGUGUAUCUCAUGAAUAAAACAAAAUACA-AAACGAGUUUCGGGCAAUCGGAAUUUGGCUGACGAUCUUUACGAUCGUCGCGACAUAAGUGUUAUGGAUCGU ----((((.....)))).......((.(((((.-...((((((((((....))))))))))((.(((((((.....))))))))).......))))).))...... ( -28.70, z-score = -2.24, R) >droAna3.scaffold_13337 15473371 106 + 23293914 CGAGCAUAUAGCUCAUGAAUUAAACAAAAUAGGAAAACGAGUUCUCGAGCUUUGGAAUUCGGAUGACGAACUUUACGAUCGGUUCGGCAUAAAUGUUAUGGAUCGU .((((.....))))((((.(((((((...........((((((((........)))))))).(((.((((((........)))))).)))...)))).))).)))) ( -25.20, z-score = -1.21, R) >droEre2.scaffold_4784 20542719 100 + 25762168 ----CAUGUAUCUCAUGAAUAAAACAAAAUACG-AAACGAG-UUUGGGCAAUCGGAAUUUGGCUGACGAACUUUACGAUCGUCGCGACAUAAGUGUUAUGGAUCGU ----((((.....)))).......((.(((((.-...((((-(((.(.....).)))))))((.(((((.(.....).))))))).......))))).))...... ( -20.40, z-score = 0.13, R) >droYak2.chr3L 21107594 101 + 24197627 ----CAUGUAUCUCAUGAAUAAAACAAAAUACG-AAACAAGUUUUGGGCCAUCGGAAUUUGGCUGACGAACUUUACGAUUGUCGCUACAUAAGUGUUAUGGAUCGU ----((((.....)))).......((.(((((.-...((((((((((....))))))))))((.(((((.(.....).))))))).......))))).))...... ( -20.20, z-score = -0.41, R) >droSec1.super_0 1094966 101 - 21120651 ----CGUGUAUCUCAUGAAUAAAACAAAAUACA-AAACGAGUUUCGGGCAAUCGGAAUUUGGCUGACGAUUUUUACGAUCGUCGCGACAUAAGUGUUAUGGAUCGU ----((((.....)))).......((.(((((.-...((((((((((....))))))))))((.(((((((.....))))))))).......))))).))...... ( -26.30, z-score = -1.50, R) >droSim1.chr3L 8263321 101 - 22553184 ----CGUGUAUCUCAUGAAUAAAACAAAAUACA-AAACAAGUUUCGGGCAAUCGGAAUUUGGCUGACGAUCUUUACGAUCGUCGCGACAUAAGUGUUAUGGAUCGU ----((((.....)))).......((.(((((.-...((((((((((....))))))))))((.(((((((.....))))))))).......))))).))...... ( -29.00, z-score = -2.85, R) >consensus ____CAUGUAUCUCAUGAAUAAAACAAAAUACA_AAACGAGUUUCGGGCAAUCGGAAUUUGGCUGACGAACUUUACGAUCGUCGCGACAUAAGUGUUAUGGAUCGU ....((((.....)))).......((.(((((.....((((((((((....))))))))))((.(((((.(.....).))))))).......))))).))...... (-20.77 = -19.92 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:27 2011