| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,767,744 – 8,767,841 |
| Length | 97 |
| Max. P | 0.865002 |
| Location | 8,767,744 – 8,767,841 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.90 |
| Shannon entropy | 0.59615 |
| G+C content | 0.49186 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -13.72 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8767744 97 + 24543557 --ACCCAAAAAGAGGAGACCAGCAGCGUCAGCUAUAAAAAAAA-----GAGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG------------ --.........(.(....))........((((((((.......-----..((((....))))((((.(((((((......))))))).))))....))))))))------------ ( -27.10, z-score = -0.94, R) >droSim1.chr3L 8212302 96 + 22553184 --ACCCAAAAAGAGGAGACCAGCAGCGUCAGCUAUAAAAAAAG------AGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG------------ --.........((((((((....(((....)))..........------.))))))))....((((.(((((((......)))))))(((....)))...))))------------ ( -27.16, z-score = -0.88, R) >droSec1.super_0 1044975 96 + 21120651 --ACCCAAAAAGAGGAGACCAGCAGCGUCAGCUAUAAAAAAA------GAGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG------------ --.........((((((((....(((....))).........------..))))))))....((((.(((((((......)))))))(((....)))...))))------------ ( -27.16, z-score = -0.88, R) >droYak2.chr3L 21055198 102 - 24197627 AAACCCAAAAAGAGGAGACCAGCAGCGUCAGCUAAAAGAAAAAAAA--GAGUUUUCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG------------ .............(....)((((.((....(((..(((((((....--...))))))).)))((((.(((((((......))))))).)))).....)).))))------------ ( -29.80, z-score = -1.59, R) >droEre2.scaffold_4784 20489574 100 - 25762168 ----CCAAAAAGAGGAGACCAGCAGCGUCAGUUAAAAAAAAAAAAAAAGAGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACAUGCCAGUUGUUACUGUAGCUG------------ ----.......(.(....))..((((..((((..................((((....))))((((.((((.((......)).)))).))))..))))..))))------------ ( -19.80, z-score = 0.61, R) >droAna3.scaffold_13337 15420244 73 - 23293914 -------------------------------AAAAGAGGAGACCAGCAGCGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG------------ -------------------------------....(((((((((....).))))))))....((((.(((((((......)))))))(((....)))...))))------------ ( -27.10, z-score = -2.20, R) >dp4.chrXR_group8 398559 81 - 9212921 --------------AGAAGCAGCAGCAU-GGCUCCAAAAAAU-------AGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUACCG------------- --------------((.((((((.((.(-(((((........-------.........)))))))).(((((((......))))))).)))))).))......------------- ( -30.23, z-score = -3.05, R) >droPer1.super_50 392310 81 + 557249 --------------AGAAGCAGCAGCAU-GGCUCCAAAAAAU-------AGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUACCG------------- --------------((.((((((.((.(-(((((........-------.........)))))))).(((((((......))))))).)))))).))......------------- ( -30.23, z-score = -3.05, R) >droWil1.scaffold_180698 3351261 75 - 11422946 -----------------------AAAAGAGGCGACCAGCAUGG------AGUUUCCUUGAGCCGGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUA------------ -----------------------......(((...(((((.((------.....)).))...((((.(((((((......))))))).))))...)))..))).------------ ( -23.40, z-score = -0.28, R) >droMoj3.scaffold_6680 4757744 97 + 24764193 -------------AAAGAGGAGACCAAAGAGCCGUAGCCAAAA------UGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUAACUGACAAGUACCGUUAACUUUUUGGUUGUGGGUG -------------...(.(....))....(.((((((((((((------.(((..(....(((....))).(((.......(((....)))))))..))).)))))))))))).). ( -23.41, z-score = 0.47, R) >consensus _____________GGAGACCAGCAGCGUCAGCUAUAAAAAAAA______AGUUUCCUUGAGCCAGCGGGCGGGUUUCAUUACCUGCCAGUUGUUACUGUAGCUG____________ ..............................................................((((.(((((((......))))))).))))........................ (-13.72 = -14.23 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:24 2011