| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,763,630 – 8,763,737 |
| Length | 107 |
| Max. P | 0.525020 |
| Location | 8,763,630 – 8,763,737 |
|---|---|
| Length | 107 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 59.80 |
| Shannon entropy | 0.86864 |
| G+C content | 0.36190 |
| Mean single sequence MFE | -20.49 |
| Consensus MFE | -6.99 |
| Energy contribution | -6.36 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8763630 107 + 24543557 UUCUCGAUAAAUUUAUAUAUAC----GCUUGCGUCGUGAGUCGUCAAUG-UGAUUUAUGC-UGGAAAAUGCAAGGCUCUCCGUCUUUAAUUUUUUUUUU-----GUAUGCCUGUCUUG- .....((((............(----(((((((.(....).)).))).)-))...(((((-.(((((((..(((((.....)))))..)))))))....-----)))))..))))...- ( -20.10, z-score = -0.85, R) >droMoj3.scaffold_6680 4752324 94 + 24764193 UUUUCUAAAAAUCAGUAU--------ACCCGCAUCAUCAAUGAUCCUACAGGGUAUAUGUAUACAAAUUUCCAAGCUUUUCAUUUCUUGUCUUCUGUUCACU----------------- ..............((((--------((((..((((....))))......))))))))((..(((......((((..........)))).....)))..)).----------------- ( -11.90, z-score = -1.37, R) >droWil1.scaffold_180698 3344697 91 - 11422946 AAUUCAAUAAAUGAAU-UGAAAUUUUGUAUGCAUUAUGAGUCGUCAGUG-UGAUUUAUGU-UCAAAAAUGCAAUGC----AACAACUUUGCCGUUUCC--------------------- ..((((((......))-))))...(((((((((((((((((((......-))))))))).-......)))).))))----))................--------------------- ( -15.41, z-score = -0.15, R) >droPer1.super_50 387155 115 + 557249 UUUUCAAUAAAUUUUA-UGUAUUUUCGUAUGCAUUAUGAGUCGUCAGAGGUGAUUUAUGG-UGGAAACUGCAAUGCC--GACUGUCUCUACCAGUCGUCUACCUGUCUUUCUGUCUCUU ...............(-(((((......))))))...(((....((((((.(((....((-((((....((...))(--(((((.......)))))))))))).))))))))).))).. ( -26.60, z-score = -1.95, R) >dp4.chrXR_group8 393543 115 - 9212921 UUUUCAAUAAAUUUUA-UGUAUUUUCGUAUGCAUUAUGAGUCGUCAGAGGUGAUUUAUGG-UGGAAACUGCAAUGCC--GACUGUCUCUACCAGUCGUCUACCUGUCUUUCUGUCUCUU ...............(-(((((......))))))...(((....((((((.(((....((-((((....((...))(--(((((.......)))))))))))).))))))))).))).. ( -26.60, z-score = -1.95, R) >droAna3.scaffold_13337 15416548 106 - 23293914 UUUUCGAUAAAUUU------AUAUUCGCUUGCAGUGUGAGUCGUCAAAUGUGAUUUAUGC-UGGAAAAUGCUCAGCUACGGCUGCCUGUCUGUUUGGCCCGCCUUGGCAGAUG------ ..............------......((((.((((((((((((.(....)))))))))))-)).))...)).((((....))))...(((((((.((....))..))))))).------ ( -30.20, z-score = -1.33, R) >droEre2.scaffold_4784 20485531 105 - 25762168 UUUUCGAUAAAUUUUUAUAC------GCUUGCGUCGUGAGUCGUCAAUG-UGAUUUAUGC-UGGAAAAUGCAAGGCUCCCCCUCUUAAUUUUUUUUAUU-----GUAUACCUGUCUGG- .....((((..........(------(((((((.(....).)).))).)-))...(((((-.(((((((...(((.....)))....))))))).....-----)))))..))))...- ( -17.10, z-score = -0.07, R) >droYak2.chr3L 21051069 97 - 24197627 UUUUCGAUAAAUGUAUAUACAUCUACGCUUGCGUCGUGAGUCGUCAAUG-UGAUUUAUGC-UGGAAAAUGCAAGGCUU----------AUUUUUU---------GUAUACCUGUCUUG- .....((((..((((((..........((((((((((((((((......-))))))))).-......)))))))....----------......)---------)))))..))))...- ( -18.86, z-score = -0.36, R) >droSec1.super_0 1040878 115 + 21120651 UUCUCGAUAAAUUUAUAUAUACAUAUGCUUGCGUCGUGAGUCGUCAAAG-UGAUUUAUGC-UGGAAAAUGCAAGGCUCUGCGUCUUAAAUUUUUUUUUUUUUU-GUAUGCCUGUCUUG- ((((.((((((((.((((....))))(((((((.(....).)))..)))-)))))))).)-.))))....((((((...(((((..(((.........)))..-).))))..))))))- ( -19.60, z-score = 0.07, R) >droSim1.chr3L 8208168 116 + 22553184 UUCUCGAUAAAUUUAUAUAUACAUAUGCUUGCGUCGUGAGUCGUCAAUG-UGAUUUAUGC-UGGAAAAUGCAAGGCUCUGCAUCUUUAAUUUUUUUUUUUUUUUGUAUGCCUGUCUUG- .....(((.............(((((....(((.(....).)))..)))-)).....(((-........)))((((..((((.....................)))).)))))))...- ( -18.50, z-score = 0.22, R) >consensus UUUUCGAUAAAUUUAUAUAUAU_UUCGCUUGCAUCGUGAGUCGUCAAAG_UGAUUUAUGC_UGGAAAAUGCAAGGCUC_GCCUCUCUAUUUUUUUUUUC_____GUAUACCUGUCUUG_ ..........................(((((((.(((((((((.......))))))))).........))).))))........................................... ( -6.99 = -6.36 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:23 2011