| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,726,304 – 8,726,398 |
| Length | 94 |
| Max. P | 0.652714 |
| Location | 8,726,304 – 8,726,398 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.06 |
| Shannon entropy | 0.19845 |
| G+C content | 0.35382 |
| Mean single sequence MFE | -15.85 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.44 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8726304 94 + 24543557 UCUACGUACAAGUAUUAUAUAUCGUAUGUGGUAUAUGGUAUAUGGUAUAUAUCAUAUCUCUAGCGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .((((((((..............)))))))).(((((((((((...)))))))))))........(((((((((((......)))))).))))) ( -20.34, z-score = -0.98, R) >droSim1.chr3L 8169993 80 + 22553184 UCUACGUACAAGUAUUAUAUAUCGUAUGUGGUAUAU--------------AUCAUAUCUCUAACGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .((((((((..............)))))))).....--------------...............(((((((((((......)))))).))))) ( -13.44, z-score = -1.07, R) >droSec1.super_0 1004050 80 + 21120651 UCUACGUACAAGUAUUAUAUAUCGUAUGUGGUAUAU--------------AUCAUAUCUCUAACGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .((((((((..............)))))))).....--------------...............(((((((((((......)))))).))))) ( -13.44, z-score = -1.07, R) >droYak2.chr3L 21013445 81 - 24197627 UCUACGUACAAGUAUCAUAUAUCGUAUGUGGUAUAUGUA-------------UAUAUCUCUAUCGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .....(((((.((((((((((...)))))))))).))))-------------)............(((((((((((......)))))).))))) ( -18.60, z-score = -2.83, R) >droEre2.scaffold_4784 20445588 75 - 25762168 UCUACGUACAAGUAUUAUAUAUCGUAUGUGGUAUAU-------------------AUCUCUAUCGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .((((((((..............)))))))).....-------------------..........(((((((((((......)))))).))))) ( -13.44, z-score = -1.31, R) >consensus UCUACGUACAAGUAUUAUAUAUCGUAUGUGGUAUAU______________AUCAUAUCUCUAACGCUAGCAAAACUCUGCCAAGUUUUCGUUGG .((((((((..............))))))))..................................(((((((((((......)))))).))))) (-13.44 = -13.44 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:19 2011