| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,724,075 – 8,724,176 |
| Length | 101 |
| Max. P | 0.994899 |
| Location | 8,724,075 – 8,724,176 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.36765 |
| G+C content | 0.52292 |
| Mean single sequence MFE | -37.51 |
| Consensus MFE | -27.68 |
| Energy contribution | -28.11 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.75 |
| SVM RNA-class probability | 0.994899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8724075 101 + 24543557 CUUGUUUGGGGCCAAACUCUUGGCCAAGAGCUUCAAUGUUGCUGGCCAUCGCUUGACAUUCGA--GUCGAGCGGUGAAUCACGGCAAGAAUUCUGGCAUCGAG ((((.((..((((((....))))))..))(((..(((.((((((..(((((((((((......--))))))))))).....))))))..)))..)))..)))) ( -39.40, z-score = -2.71, R) >droSim1.chr3L 8167757 101 + 22553184 CUUGUUUGGGGCCAAACUCUUGGCCAAGAGCUUCAAUGCUGCUGGCCAUCGCUUGACAUUCGA--GUCGAGCGGUGAAUCACGGCAAGAAUUCUGGCUUCGAG .....(((((((((((.(((((((((..(((......)))..))))(((((((((((......--)))))))))))........))))).)).))))))))). ( -44.20, z-score = -3.88, R) >droSec1.super_0 1001825 101 + 21120651 CUUGUUUGGGGCCAAACUCUUGGCCACGAGCUUCAAUGCUGCUGGCCAUCGCUUGACAUUCGA--GUCGAGCGGUGAAUCACGGCAAGAAUUCUGGCUUCGAG .....(((((((((((.(((((((((..(((......)))..))))(((((((((((......--)))))))))))........))))).)).))))))))). ( -43.80, z-score = -3.83, R) >droYak2.chr3L 21011286 103 - 24197627 CUUGUUUGGGGCCAAACUCUUGGCCAAGAGCUUCAAUGCUGCUGGCCAUCGCUUGACAUUCGACAGUCGAGCGGUGAAUCACGGCUAAAAUUCUGGCUUCGAG .....(((((((((.....((((((.(((((......))).))...(((((((((((........)))))))))))......)))))).....))))))))). ( -41.10, z-score = -3.43, R) >droEre2.scaffold_4784 20443509 101 - 25762168 CUUGUUUGGGGCCGAACUCUUGGCCAAGAGCUUCAAUGCUGCUGGCCAGCGCUUGACAUUCGA--GUCGAGCGGUGAAUCACGGCAAGAAUUCUGGCUUCGAG .....(((((((((((.(((((((((..(((......)))..))))((.((((((((......--)))))))).))........))))).))).)))))))). ( -44.10, z-score = -3.14, R) >dp4.chrXR_group8 345846 90 - 9212921 CUGGUUUACGUCCGAGCUGUGGGCCA----------UAUUGCCA-CCUUCGGUUGACAUUCGA--GUCGCUUGGUGAAUCACCAAGAGAAUUCUUGACUUGAA ...(((.....(((((..((((....----------.....)))-).)))))..))).(((((--(((.(((((((...)))))))((....)).)))))))) ( -27.00, z-score = -1.34, R) >droPer1.super_50 339150 90 + 557249 CUGGCUUACGUCCGAGCUGUGGGCCA----------UAUUGCCA-CCUUCGGUUGACAUUCGA--GUCGCUUGAUGAUUCACCAAGAGAAUUCUUGACUUGAA .(((((((((.......)))))))))----------...((.((-.(....).)).))(((((--(((...(((....)))....(((....))))))))))) ( -23.00, z-score = -0.42, R) >consensus CUUGUUUGGGGCCAAACUCUUGGCCAAGAGCUUCAAUGCUGCUGGCCAUCGCUUGACAUUCGA__GUCGAGCGGUGAAUCACGGCAAGAAUUCUGGCUUCGAG .....(((((((((......((((((..(((......)))..))))))(((((((((........)))))))))...................))))))))). (-27.68 = -28.11 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:18 2011