Locus 667

Sequence ID dm3.chr2L
Location 4,627,618 – 4,627,718
Length 100
Max. P 0.996723
window887

overview

Window 7

Location 4,627,618 – 4,627,718
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 98.00
Shannon entropy 0.03610
G+C content 0.41800
Mean single sequence MFE -30.22
Consensus MFE -29.80
Energy contribution -29.64
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -3.14
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.97
SVM RNA-class probability 0.996723
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4627618 100 - 23011544
UUUCUACUUAAAUGUAUUUUAUUGGCGCUCGGGGCGCUGCCGAGAGCACAAAUCAAAACUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.(((..((............))...)))))))))..))))))))..)))).)))........ ( -29.60, z-score =  -2.95, R)
>droSim1.chr2L 4508076 100 - 22036055
UUUCUACUUAAAUGUAUUUUAUUGGCGCUCGGGGCGCUGCCGAGAGCACAAAUCAAAACUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.(((..((............))...)))))))))..))))))))..)))).)))........ ( -29.60, z-score =  -2.95, R)
>droSec1.super_5 2712966 100 - 5866729
UUUCUACUUAAAUGUAUUUUAUUGGCGCUCGGGGCGCUGCCGAGAGCACAAAUCAAAACUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.(((..((............))...)))))))))..))))))))..)))).)))........ ( -29.60, z-score =  -2.95, R)
>droYak2.chr2L 4642401 100 - 22324452
UUUCUACUUAAAUGUAUUUUAUUGGCGCUCGGGGCGCUGCCGAGAGCACAAAUCAAAUCUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.((((((............)))...)))))))))..))))))))..)))).)))........ ( -30.40, z-score =  -3.06, R)
>droEre2.scaffold_4929 4708483 100 - 26641161
UUUUUACUUAAAUGUAUUUCAUUGGCGCUCGGGGCGCUGCCGUAAGCACAAAUCAAAACUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.(.((.((............)).)).).))))))..))))))))..)))).)))........ ( -31.90, z-score =  -3.77, R)
>consensus
UUUCUACUUAAAUGUAUUUUAUUGGCGCUCGGGGCGCUGCCGAGAGCACAAAUCAAAACUAACUGGAGUGCUUAGAGUGCCAUAGAGAAACAAACAACAU
............(((.((((..((((((((..((((((.(((..((............))...)))))))))..))))))))..)))).)))........ (-29.80 = -29.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:01 2011