| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,703,556 – 8,703,647 |
| Length | 91 |
| Max. P | 0.769038 |
| Location | 8,703,556 – 8,703,647 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.47946 |
| G+C content | 0.56974 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -16.45 |
| Energy contribution | -17.46 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8703556 91 + 24543557 ------GCGUACGUCCUUCACGCUUGGCUGCCAUUUCGGCACUCGUACUCGCC-GGCAGUCAAACGUGGCCAAAAGCAAAACAACAACUCCCCGGCAC---------- ------......(((...((((.(((((((((.....(((..........)))-))))))))).))))((.....))................)))..---------- ( -25.60, z-score = -1.09, R) >droWil1.scaffold_180698 3256143 106 - 11422946 GUAUGUACAUACGUCCUUCAUGGUCGGCUGCCCUUUGGGCACUCGGUUGCACCUAGCAAACACUCAAUG--AAUGGUGGUUUGGCUUGAGCCGAGACCGAGACGAGAA ((((....))))..((.....))(((..(((((...)))))(((((((.((((...((.........))--...))))..(((((....)))))))))))).)))... ( -33.40, z-score = -0.61, R) >droAna3.scaffold_13337 15358577 82 - 23293914 ------GCGUACGUCCUUCACGCUCGGCUGCCAUUUGGGCACUCG------CU-GGCACUCAGUCGUGG---AGCACAAAAAGAAAUAUUACAAGCAC---------- ------((....((.(((((((((.((.(((((.....((....)------))-)))))).)).)))))---)).))....(....).......))..---------- ( -21.30, z-score = -0.35, R) >droEre2.scaffold_4784 20422819 88 - 25762168 ------GCGUACGUCCUUCACGCUUGGCUGCCAUUUCGGCACUCGUACUUGCC-GGCAGUCAAUCGUGGCCAAAACCAAAACAAC---ACCCCGGCAC---------- ------............((((.(((((((((.....((((........))))-))))))))).))))(((..............---.....)))..---------- ( -27.01, z-score = -1.90, R) >droYak2.chr3L 20990493 88 - 24197627 ------GCGUACGUCCUUCACGCUUGGCUGCCAUUUCGGCACUCGUACUCGCC-GGCAGUCAAACGUGGCCAAAACCAAAACAAC---ACCCCGGCAC---------- ------............((((.(((((((((.....(((..........)))-))))))))).))))(((..............---.....)))..---------- ( -25.31, z-score = -1.30, R) >droSec1.super_0 981362 88 + 21120651 ------GCGUACGUCCUUCACGCUUGACUGCCAUUUCGGCACUCGUACUCGCC-GGCAGUCAAACGUGGCCAAAAGCAAAACAAC---UCCCCGGCAC---------- ------......(((...((((.(((((((((.....(((..........)))-))))))))).))))((.....))........---.....)))..---------- ( -26.20, z-score = -1.95, R) >droSim1.chr3L 8146426 88 + 22553184 ------GCGUACGUCCUUCACGCUUGGCUGCCAUUUCGGCACUCGUACUCGCC-GGCAGUCAAACGUGGCCAAAAGCAAAACAAC---UGCCCGGCAC---------- ------............((((.(((((((((.....(((..........)))-))))))))).))))(((....(((.......---)))..)))..---------- ( -28.10, z-score = -1.29, R) >consensus ______GCGUACGUCCUUCACGCUUGGCUGCCAUUUCGGCACUCGUACUCGCC_GGCAGUCAAACGUGGCCAAAAGCAAAACAAC___UCCCCGGCAC__________ .................(((((.(((((((((.....(((..........))).))))))))).)))))....................................... (-16.45 = -17.46 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:12 2011