| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,700,660 – 8,700,751 |
| Length | 91 |
| Max. P | 0.798210 |
| Location | 8,700,660 – 8,700,751 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.62 |
| Shannon entropy | 0.47178 |
| G+C content | 0.63776 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -20.02 |
| Energy contribution | -19.85 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8700660 91 + 24543557 AUCCUGCCUCCAAUCC--GGACUCUCGA-------GUCUGGA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGCGGAG ....((((((((.(((--(((((....)-------)))))))-.....)).))))))---.((((..((..((..(((((....)))))...))..)))))).. ( -37.30, z-score = -2.29, R) >droSim1.chr3L 8143794 93 + 22553184 AUCCUGCCUCCAAUCCCCGGACUCCCGA-------GUCUGGA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGCGGAC ....((((((((....(((((((....)-------)))))).-.....)).))))))---.((((..((..((..(((((....)))))...))..)))))).. ( -36.10, z-score = -1.99, R) >droSec1.super_0 978721 93 + 21120651 AUCCUGCCUCCAAUGCUCGGACUACCGA-------GUCUGGA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGCGGAC ....((((((((..(..((((((....)-------)))))..-)....)).))))))---.((((..((..((..(((((....)))))...))..)))))).. ( -34.20, z-score = -1.34, R) >droYak2.chr3L 20987768 98 - 24197627 AUCCUGCCUCCAUUCC--GGACUCCCGACUCCCGAGUCUGGA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGAGGAC .(((((((((((((((--((((((.........)))))))))-....))).)))))(---((........)))..(((((....)))))..........)))). ( -37.90, z-score = -1.74, R) >droEre2.scaffold_4784 20417044 91 - 25762168 AUCCUGCCUCCAUUCC--GGACUCCCGA-------GUCUGGA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGCGGAC ....((((((((((((--(((((....)-------)))))))-....))).))))))---.((((..((..((..(((((....)))))...))..)))))).. ( -38.40, z-score = -2.59, R) >droAna3.scaffold_13337 15355957 77 - 23293914 --------CCCGGGUCUUGGCGUUUCGG--------UCUGAA-CCUCGUGUGAGGCG---ACCGCCAACAGUCACGACCCCACAGGGUCUCACAGGG------- --------((((((((.(((((((.(((--------((....-((((....)))).)---))))..))).)))).))))).....(......).)))------- ( -28.90, z-score = -0.29, R) >droPer1.super_50 314473 85 + 557249 -CUGUGGCUGCAGCUGCAGCAUUGUGGG-------ACCUGGGUCCUCGUGUGAGGCGGCGACCGCCAACAGUCACGACCCCACAGGGUCUCGG----------- -(((((((.(..(((((..(((...(((-------((....)))))...)))..)))))..).))).))))....(((((....)))))....----------- ( -39.20, z-score = -1.08, R) >dp4.chrXR_group8 320825 85 - 9212921 -CUGUGGCUGCAGCUGCAGCAUUGUGGG-------ACCUGGGUCCUCGUGUGAGGCGGCGACCGCCAACAGUCACGACCCCACAGGGUCUCGG----------- -(((((((.(..(((((..(((...(((-------((....)))))...)))..)))))..).))).))))....(((((....)))))....----------- ( -39.20, z-score = -1.08, R) >consensus AUCCUGCCUCCAAUCC__GGACUCCCGA_______GUCUGGA_CCUCGUGUGAGGCG___ACCGCCAACAGUCACGACCCCACAGGGUCUCAGAAAGUGCGGAC ........(((.......)))...............(((((........((((((((.....)))).....))))(((((....)))))))))).......... (-20.02 = -19.85 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:11 2011