| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,693,474 – 8,693,569 |
| Length | 95 |
| Max. P | 0.830352 |
| Location | 8,693,474 – 8,693,569 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 77.53 |
| Shannon entropy | 0.39936 |
| G+C content | 0.43522 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -12.33 |
| Energy contribution | -14.62 |
| Covariance contribution | 2.29 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8693474 95 + 24543557 UUCAUACGUACAUACGUACAUAUGUGUGUACACAUAGUCGUAGAGCCGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCG-CCGCGAGUUGUGUCAAG .......((((((((((....))))))))))((((((((((.((((.........((((((.....)))))).)))).-..)))).)))))).... ( -26.80, z-score = -2.18, R) >droSim1.chr3L 8136493 92 + 22553184 ---GUACAUACGUACGAACGUAUGUGUGUACACAUAGUCGUAGAGCCGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCG-CCGCGAGUUGUGUCAAG ---((((((((((((....))))))))))))((((((((((.((((.........((((((.....)))))).)))).-..)))).)))))).... ( -31.50, z-score = -3.35, R) >droSec1.super_0 971494 92 + 21120651 ---GUACAUACGUACGAACGUAUGUGUGUACACACAGUCGUAGAGCCGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCG-CCGCGAGUUGUGUCAAG ---((((((((((((....))))))))))))((((((((((.((((.........((((((.....)))))).)))).-..)))).)))))).... ( -33.40, z-score = -3.75, R) >droEre2.scaffold_4784 20410195 86 - 25762168 ---------GUACACAUGUGUAAGUGUGUGCACAUAGUCGUAGAGCCGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCG-CCGCGAGUUGUGUCAAG ---------((((((((......))))))))((((((((((.((((.........((((((.....)))))).)))).-..)))).)))))).... ( -25.30, z-score = -2.07, R) >droWil1.scaffold_180698 3241741 78 - 11422946 ----------------CACCGACGU-CGCCGGCGUCGUCGUCGU-UAGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCGGCUUUGAGUUGUGUCGAG ----------------((((((((.-((....)).)))))(((.-.((((.....((((((.....)))))).....)))).)))...)))..... ( -19.80, z-score = -0.62, R) >consensus ____UAC_UACAUACGAACGUAUGUGUGUACACAUAGUCGUAGAGCCGCUUUUAUCAAUAAUUAUUUUGUUGUGCUCG_CCGCGAGUUGUGUCAAG ....(((((((((....)))))))))((.(((((...((((.((((.........((((((.....)))))).))))....))))..))))))).. (-12.33 = -14.62 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:10 2011