| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,693,035 – 8,693,096 |
| Length | 61 |
| Max. P | 0.901559 |
| Location | 8,693,035 – 8,693,096 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 82.35 |
| Shannon entropy | 0.27285 |
| G+C content | 0.39073 |
| Mean single sequence MFE | -15.17 |
| Consensus MFE | -14.10 |
| Energy contribution | -15.35 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8693035 61 - 24543557 ---CGAAAAAUAUGAUAUAUACAUGUAUGUCAUAUAUG-UACAUACAACCGUGGCGAGCACGGGU ---......(((((((((((....)))))))))))...-.........(((((.....))))).. ( -17.20, z-score = -2.20, R) >droSim1.chr3L 8136038 57 - 22553184 ---CGAAAUAUAUGAUAUAUACAUGUAUGCCAUAUGUG-----UACAACCGUGGCGAGCACGGGU ---....(((((((.(((((....))))).))))))).-----.....(((((.....))))).. ( -14.70, z-score = -0.72, R) >droSec1.super_0 971055 57 - 21120651 ---CGAAAUAUAUGAUAUAUACAUGUAUGCCAUAUGUG-----UACAACCGUGGCGAGCACGGGU ---....(((((((.(((((....))))).))))))).-----.....(((((.....))))).. ( -14.70, z-score = -0.72, R) >droYak2.chr3L 20979941 64 + 24197627 CGAAAAAAAAUAUGAUAUAUGUAUGUAUGU-AUAUAUAGCAAAUAUAGCCGUGGCGAGCACGGGU .........((((..(((((((((....))-)))))))....))))..(((((.....))))).. ( -14.10, z-score = -1.73, R) >consensus ___CGAAAAAUAUGAUAUAUACAUGUAUGCCAUAUAUG_____UACAACCGUGGCGAGCACGGGU .......(((((((((((((....)))))))))))))...........(((((.....))))).. (-14.10 = -15.35 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:09 2011