| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,691,121 – 8,691,216 |
| Length | 95 |
| Max. P | 0.881653 |
| Location | 8,691,121 – 8,691,216 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.44531 |
| G+C content | 0.66407 |
| Mean single sequence MFE | -40.64 |
| Consensus MFE | -23.69 |
| Energy contribution | -24.11 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8691121 95 - 24543557 CCCAGCACGAGCAGCACGCUCAAUUGGGGCUGUGGCUCGUCUUUCUGAUUGCUGGCGGACCGAUCACCGAC-----------CGCUGACCGCCCCUGCACCACCCC-- ....(((.((((.....))))....(((((.(((((..(((.....))).)))(((((..((.....)).)-----------)))).)).))))))))........-- ( -32.30, z-score = -0.78, R) >droPer1.super_50 303129 90 - 557249 CCCAGCACGAGCAGCACGCUCAAUUGGGGCUGGGGCUCGUGUUGCUGAUUGCCAUUGG---AG-CAGCAGCAGC--------GAUCGUUUGCCCCUGCCCUG------ ........((((.....))))....(((((.(((((.((((((((((.(((((....)---.)-))))))))))--------)..))...))))).))))).------ ( -43.30, z-score = -2.25, R) >dp4.chrXR_group8 310040 93 + 9212921 CCCAGCACGAGCAGCACGCUCAAUUGGGGCUGGGGCUCGUGUUGCUGAUUGCCAUUGGAGCAG-CAGCAGCAGC--------GAUCGUUUGCCCCUGCCCUG------ ........((((.....))))....(((((.((((((((((((((((.(((((....).))))-)))))))).)--------))......))))).))))).------ ( -44.50, z-score = -2.06, R) >droAna3.scaffold_13337 15345283 102 + 23293914 -CCGGCACGAGCAGCACGCUCAAUUGGGGCUGUGGCUCGUGUUGCUGAUUGCCAGUGGAGCGAUCGGUGUCCGCU----GUCCGCUGACCGCC-CUGCCCCACCUCCG -.(((...((((.....))))...((((((.(.(((.......((((((((((....).)))))))))(((.((.----....)).))).)))-).))))))...))) ( -41.50, z-score = -0.46, R) >droEre2.scaffold_4784 20407796 100 + 25762168 -CCAGCACGAGCAGCACGCUCAAUUGGGGCUGUUGCUCGUGUUGCUGAUUGCCGCCGGACCGAUCAGCGACCGAU-------CACCGACCGCCGAUCACCAACCGCUG -.((((((((((((((.((((.....))))))))))))))((((.((((((.((.(((...((((.......)))-------).)))..)).)))))).)))).)))) ( -44.20, z-score = -3.90, R) >droYak2.chr3L 20977834 107 + 24197627 -CCAGCACGAGCAGCACGCUCAAUUGGGGCUGUGGCUCGUGUUGCUGAUUGCCGGCGGAGCGAUCAGCCACCGAUCACCGACCGCUGACCGCCCCUGCACCACCCCCC -.((((((((((.(((.((((.....))))))).)))))))))).....(((.((.((.(((.(((((...((.....))...))))).))))))))))......... ( -43.80, z-score = -1.99, R) >droSec1.super_0 969081 94 - 21120651 -CCAGCACGGGCAGCACGCUCAAUUGGGCCUGUGGCUCGUGUUGCUGAUUGCCGGCGGACCGAUCACCGAC-----------CGCUGACCGUCCCUGCGCCACCCC-- -.((((((((((.(((.((((....)))).))).))))))))))......(((((.((((.(.(((.(...-----------.).)))).))))))).))......-- ( -37.60, z-score = -0.75, R) >droSim1.chr3L 8134053 94 - 22553184 -CCAGCACGAGCAGCACGCUCAAUUGGGCCUGUGGCUCGUGUUGCUGAUUGCCGGCGGACCGAUCACCGAC-----------CGCUGACCGCCCCUGCGCCACCCC-- -.((((((((((.(((.((((....)))).))).))))))))))........((((((..((.....)).)-----------)))))..(((....))).......-- ( -37.90, z-score = -1.77, R) >consensus _CCAGCACGAGCAGCACGCUCAAUUGGGGCUGUGGCUCGUGUUGCUGAUUGCCGGCGGACCGAUCAGCGAC_G_________CGCUGACCGCCCCUGCCCCACCCC__ ..((((((((((.(((.((((.....))))))).)))))))))).((((((.........)))))).......................................... (-23.69 = -24.11 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:08 2011