| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,685,696 – 8,685,754 |
| Length | 58 |
| Max. P | 0.891104 |
| Location | 8,685,696 – 8,685,754 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 77.50 |
| Shannon entropy | 0.43919 |
| G+C content | 0.51578 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -11.29 |
| Energy contribution | -12.94 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8685696 58 - 24543557 GGCUGAUAAGCUGUU-----UACGACGACCGACGUCUUGGGCCUCGGCAGACAAUCAGUCAUA (((((((...((((.-----..(((.(.((((....)))).).)))))))...)))))))... ( -18.70, z-score = -1.85, R) >droSim1.chr3L 8128404 58 - 22553184 GGCUGAUAAGCUGUU-----UACGACGACCGACGUCUUGGGCCUCGGCAGACAAUCAGUCAUA (((((((...((((.-----..(((.(.((((....)))).).)))))))...)))))))... ( -18.70, z-score = -1.85, R) >droSec1.super_0 963465 58 - 21120651 GGCUGAUAAGCUGUU-----UACGACGACCGACGUCUUGGGCCUCGGCAGACAAUCAGUCAUA (((((((...((((.-----..(((.(.((((....)))).).)))))))...)))))))... ( -18.70, z-score = -1.85, R) >droYak2.chr3L 20971811 58 + 24197627 GGCUGAUAAGCUGUU-----UACGACGAUCGACGUCUUGGGCCUCGGCAGACAAUCAGUCAUA (((((((....((((-----(..((((.....))))....((....))))))))))))))... ( -17.30, z-score = -1.40, R) >droEre2.scaffold_4784 20401960 58 + 25762168 GGCUGAUAAGCUGUU-----UACGACGACCGGCGUCUUGAGCCUCGGCAGACAAUCAGUCAUA (((((((..((((.(-----(.....)).))))((((...((....)))))).)))))))... ( -18.70, z-score = -1.66, R) >droAna3.scaffold_13337 15340831 59 + 23293914 ACCUGAUAAGCUGUUCCGUCUUGGCCAGCCGGCAGCCGGAGC---GCCAGACAAUCAGUCAU- .........((((....((((.(((...((((...))))...---)))))))...))))...- ( -18.70, z-score = -1.00, R) >droWil1.scaffold_180698 3228155 58 + 11422946 AGCUGAUAAGACGGU---UUUUUUUUUGUUAGU--CUUUCACUCUGGCAGACAAUCAGUCAUA .((((((..(((((.---.......))))).((--((.((.....)).)))).)))))).... ( -12.00, z-score = -1.52, R) >consensus GGCUGAUAAGCUGUU_____UACGACGACCGACGUCUUGGGCCUCGGCAGACAAUCAGUCAUA (((((((...(((((........((((.....)))).........)))))...)))))))... (-11.29 = -12.94 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:07 2011