| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,673,657 – 8,673,771 |
| Length | 114 |
| Max. P | 0.734882 |
| Location | 8,673,657 – 8,673,771 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.13 |
| Shannon entropy | 0.36805 |
| G+C content | 0.51537 |
| Mean single sequence MFE | -37.19 |
| Consensus MFE | -22.24 |
| Energy contribution | -23.52 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8673657 114 - 24543557 GCUAGACGAGCCACGAUGAGUAAUCCUCAUUGAUGGGCCGAAAGUCGGUCGUCCCCCAUAGUGACUAAUCAAGUGCACUUUCGGUUCAGUGGGGC-----AAAAGCCUGGUCAUGCAAC ((..(((...((((((((((.....))))))..((((((((((((.((.......))...((.(((.....)))))))))))))))))))))(((-----....)))..)))..))... ( -38.40, z-score = -1.78, R) >droAna3.scaffold_13337 15328770 108 + 23293914 GCUAGAAAUUGGACCAUGAAUCA----GACUAGAGGGCCAAGAGUCG------UCCC-CAGUGAGUAAUCAAGUGCACUUUCGAUUCAGUGGGUCGGGUAAAUUGAAUGGCCACGCCAC ((((..((((..(((.(((....----.....((.(((.....))).------))((-((.(((((....(((....)))...))))).)))))))))).))))...))))........ ( -26.90, z-score = 0.38, R) >droEre2.scaffold_4784 20390022 111 + 25762168 GCUAGACAAACUACGAUGAGUAAUCAUCAUUUGUGGGCCGAAAGUCGGUA---CCCCACGGUGACUAGUCAAGUCCACUUUCGGUUCAGUGGGGC-----AAAAGCCUGGUCAUGCAAC ((..(((...(((((((((....))))).....((((((((((((.((((---((....))))(((.....)))))))))))))))))))))(((-----....)))..)))..))... ( -41.10, z-score = -3.36, R) >droYak2.chr3L 20959396 112 + 24197627 GCUAGACGAGCUGCGAUGAGUAAUCCUCAUUAAUGGGCCGAAAGUCGGUAGCCCACA--AAUGACUAAUCAAGUGCACUUUCGGUUCAGUGGGGC-----AAAAGCCUGGUCAUGCAAC ((..(((...(..(((((((.....))))))..((((((((((((.((....)).((--..(((....)))..)).)))))))))))))..)(((-----....)))..)))..))... ( -35.20, z-score = -1.52, R) >droSec1.super_0 951501 114 - 21120651 GCUAGACGAACCGCGAUGAGUAAUCCUCAUCGAUGGGUCGAAAGUCGGUCGUCUCCCACAGUGAUUAAUCGAGUGCACUUUCGGUUCAGUGGGGC-----AAAAGCCUGGUCAUGCAAC ((..(((...((((((((((.....))))))..((..((((((((((.(((..................))).)).))))))))..))))))(((-----....)))..)))..))... ( -40.77, z-score = -2.35, R) >droSim1.chr3L 8116492 114 - 22553184 GCUAGACGAACCGCGAUGAGUAAUCCUCAUCGAUGGGUCGAAAGUCGGUCGUCUCCCACAGUGACUAAUCGAGUGCACUUUCGGUUCAGUGGGGC-----AAAAGCCUGGUCAUGCAAC ((..(((...((((((((((.....))))))..((..((((((((((.(((..................))).)).))))))))..))))))(((-----....)))..)))..))... ( -40.77, z-score = -2.15, R) >consensus GCUAGACGAACCACGAUGAGUAAUCCUCAUUGAUGGGCCGAAAGUCGGUCGUCCCCCACAGUGACUAAUCAAGUGCACUUUCGGUUCAGUGGGGC_____AAAAGCCUGGUCAUGCAAC ((..(((...((((((((((.....))))))..((((((((((((.((......)).....(((....))).....))))))))))))))))(((.........)))..)))..))... (-22.24 = -23.52 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:07 2011