| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,671,697 – 8,671,793 |
| Length | 96 |
| Max. P | 0.757844 |
| Location | 8,671,697 – 8,671,793 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 48.14 |
| Shannon entropy | 1.03361 |
| G+C content | 0.51366 |
| Mean single sequence MFE | -30.71 |
| Consensus MFE | 0.00 |
| Energy contribution | 0.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 0.00 |
| Mean z-score | -2.61 |
| Structure conservation index | -0.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8671697 96 + 24543557 ---CAAACAUGCGAAUCCUAAACUCGGUUCACAA-CUUCGUUGGCUUAGUUUCCUGGCUUAUAUCCUGGAAACCCGU-CGACGAGGCUAAGGACCUUCAUC--------- ---......................(((((....-((((((((((...((((((.((.......)).))))))..))-))))))))....)))))......--------- ( -28.80, z-score = -3.04, R) >droSim1.chr3L 8114494 95 + 22553184 ---CAAACAUGCGAAUCCUAA-AUCGGUUCACGGCUUUCGUGGGCUUAGUUUCCUGGCUUAUACCCUG-AAACACGC-UGGCGAGGCUAAGAACCUUCAUC--------- ---..................-...(((((..(((((.(((.(((...(((((..((......))..)-))))..))-).))))))))..)))))......--------- ( -27.60, z-score = -1.93, R) >droSec1.super_0 949519 95 + 21120651 ---CAAACAUGCGAAUCCUAA-AUCGGUUCACGG-CUUCGUUGGCUUAGUUUCCUGGCUUAUACCCUGGAAACCCGC-UGGCGAGGCUAAAAACCUUCAUC--------- ---..................-...((((...((-((((((..((...((((((.((.......)).))))))..))-..))))))))...))))......--------- ( -32.00, z-score = -3.58, R) >droYak2.chr3L 20957404 96 - 24197627 ---CAAACAUGCGAAUCCUAA-CUCGGUCCACGGGCUUCGUCGGCUCAGUUUCCUCGCUUAUAUCCUGGAAACCAGC-CGGCGAGACUAAGGACCUUCAUC--------- ---..................-...(((((...((..(((((((((..((((((.............)))))).)))-))))))..))..)))))......--------- ( -34.42, z-score = -3.61, R) >droEre2.scaffold_4784 20388099 95 - 25762168 ---CAAACAUGCGAGUCCUAA-CUCGGUCCACGG-CUUCGUCGGCUUAGUUUCCUGGCUUACAUCCGGGAAACCCGC-CGGCGAGGCUACGGACCUCCAUC--------- ---.........((((....)-)))(((((..((-((((((((((...(((((((((.......)))))))))..))-))))))))))..)))))......--------- ( -48.50, z-score = -6.32, R) >droAna3.scaffold_13337 15326987 82 - 23293914 ------CCAUGCUAA----GAAAUCGGUUGAGAACCUCCCAGGG------UUCCACAUCUAUUCCCAGGAAUAAUCC-CUGCGAGGUCAGGA--CCUCAUC--------- ------.........----......((((..((.((((.(((((------.........(((((....)))))..))-))).))))))..))--)).....--------- ( -23.20, z-score = -1.06, R) >dp4.chrXR_group8 287554 88 - 9212921 CCGAGAACAUGCAGG----A----UCCAUCAUCAAAACAGGGGGGGGGUCCCCCCUACCACUCGCUGGAAAAAGCG---AGAGACUGGGGGAUCCCCCC----------- ((......(((..(.----.----..)..))).......))(((((((((((((....(.((((((......))))---)).)...)))))))))))))----------- ( -40.72, z-score = -2.42, R) >droPer1.super_50 280872 84 + 557249 CCGAGAACAUGCAGG----A----UCCAUCAUCAAAACAGGGGGGU--CCCCCCCUACCACUCGCUGGAAAAGGCG---AGAGACUGGGGGAUCCCC------------- .............((----(----(((..((((.....((((((..--..))))))....((((((......))))---)).)).))..))))))..------------- ( -35.70, z-score = -1.99, R) >droWil1.scaffold_180698 3205751 92 - 11422946 --UGAAACAUGCGAA----AA--AUCCUUCAUGGUCUGAAAACAUUUCACUCUGAGUUUACCUUAAA--ACCAACUCUUAGUGAGCUGAAAGACUUUCAUUC-------- --(((((((((.((.----..--.))...))))((((.....((.((((((..(((((.........--...)))))..)))))).))..)))))))))...-------- ( -17.90, z-score = -1.74, R) >droMoj3.scaffold_6680 4642732 97 + 24764193 ---CGAGCAAGCGGA----A----CUCCUAAUUCGCUCC--ACGUUUCACUUGGGCAUUUCUCUAAAGGAGAAUUGUUCAGCGAGAUGAAGAGCAUCCAUACCCAUCCCC ---.........((.----.----..))......((((.--.((((((.((.(((((.(((((.....))))).))))))).))))))..))))................ ( -27.20, z-score = -1.95, R) >droVir3.scaffold_13049 6327692 86 + 25233164 ---CGAGCAUGCGAG----A----CUCCUAAUUUGUUG---AAAUCUCGCCGAAGUUCAUUUUCCACUGGAAAAUGCCCAUCGAGAUGGAGA-CAUUCAUC--------- ---.......(((((----(----..............---...))))))(((.(..((((((((...))))))))..).))).((((....-))))....--------- ( -21.73, z-score = -1.12, R) >consensus ___CAAACAUGCGAA____AA__UCGGUUCACGG_CUUCGUGGGCUUAGCUUCCUGGCUUAUAUCCUGGAAAAACGC_CAGCGAGGCGAAGAACCUUCAUC_________ .............................................................................................................. ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:06 2011