| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,664,914 – 8,665,013 |
| Length | 99 |
| Max. P | 0.800706 |
| Location | 8,664,914 – 8,665,013 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 65.63 |
| Shannon entropy | 0.66250 |
| G+C content | 0.39025 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -7.56 |
| Energy contribution | -8.45 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8664914 99 - 24543557 CAACAUAAAACUCAUUUGUUAUCUUUCAAUGUCACCCAAAUUUGAGGCCACAAAGGGAGCUACAAUGUUUUCUAAUCCCUCAGAUAUGGGUAUUUCUCA ........(((......))).............(((((.((((((((......((..(((......)))..))....)))))))).)))))........ ( -23.90, z-score = -2.77, R) >droEre2.scaffold_4784 20381435 99 + 25762168 CCACAUAGCACUAGUUUGCUGACUUCAAAGGUGACCUAAAUUCGGAGUUACAAAGGGAGCUACAAUGUUUCCUAAUCCCAUAGAUAUGGGUAUACCUCA .....(((((......))))).......((((((((((.(((.((..((....(((((((......)))))))))..))...))).))))).))))).. ( -24.00, z-score = -1.01, R) >droYak2.chr3L 20950720 82 + 24197627 CCACAGAAAACUUGUUUGUUACCUU-----------------CAAAGUUACAAAGGGAGCUGCCGUGUUUCCUAAUCCCCUAGAAAUGGGCAUACCUCA ...............((((.((...-----------------....)).))))(((((((......))))))).....((((....))))......... ( -14.20, z-score = 0.66, R) >droSec1.super_0 942864 98 - 21120651 CAACAUUAAACUCAUUUGUUGUCUUUC-AAGUGACCCAAAUUUGAGGCUACAAAGGGAGCUACAAUGUUUCCUAAUCCCUCAGAUAUGGGUAUAUCUCA ............((((((........)-)))))(((((.((((((((......(((((((......)))))))....)))))))).)))))........ ( -30.60, z-score = -4.17, R) >droSim1.chr3L 8104799 99 - 22553184 CAACAUAAAACUCAUUUGUUAUCUUUCAAAGUGACCCAAAUUUGAGGCUACAAAGGGAGCUACAAUGUUUCCUAAUCCCUCAGAUAUGGGUAUAUUUCA ............(((((...........)))))(((((.((((((((......(((((((......)))))))....)))))))).)))))........ ( -27.40, z-score = -3.61, R) >droVir3.scaffold_13049 6321016 94 - 25233164 -AUUCCUGAGCACAUUCCGAAGUAGAACAAAGAA---AAUUGUAGAGUUAAAAAGGGUCCAGCCG-AUUCCCGAGCUUAUCUGUAAUCUCUAUACAUCA -.................................---...((((((((((....((((..(((((-.....)).))).)))).))).)))))))..... ( -13.20, z-score = 0.64, R) >consensus CAACAUAAAACUCAUUUGUUAUCUUUCAAAGUGACCCAAAUUUGAAGCUACAAAGGGAGCUACAAUGUUUCCUAAUCCCUCAGAUAUGGGUAUACCUCA .....................................................(((((((......)))))))...(((........)))......... ( -7.56 = -8.45 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:05 2011