| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,623,140 – 4,623,247 |
| Length | 107 |
| Max. P | 0.711280 |
| Location | 4,623,140 – 4,623,247 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.19 |
| Shannon entropy | 0.51531 |
| G+C content | 0.42346 |
| Mean single sequence MFE | -27.89 |
| Consensus MFE | -13.22 |
| Energy contribution | -13.09 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4623140 107 - 23011544 UUCGAGGUAUUUCUAUCUAAUUAGA--CGAAAUGCCAUAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUGGAGCGACUUGAUCUGAUUA-GGC---GAGAUCGAAUC----- (((((((((((((..(((....)))--.)))))))).....(((((..(((((((..........))).))))...))))).((((.(((....)-)))---))).)))))..----- ( -29.30, z-score = -1.57, R) >droSim1.chr2L 4503316 107 - 22036055 UUCGAGGUAUUUCUAUCUAAUUAGA--CAAAAUGCCAUAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUGGAGCGACUUGAUCUGAUUA-GGC---GAGAUCGAAUC----- (((((((((((((((......))))--...)))))).....(((((..(((((((..........))).))))...))))).((((.(((....)-)))---))).)))))..----- ( -27.20, z-score = -1.15, R) >droSec1.super_5 2708521 107 - 5866729 UUCGAGGUAUUUCUAUCUAAUUAGA--CGAAAUGCCAUAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUGGAGCGACUUGAUCUGAUUA-GGC---GAGAUCGAAUC----- (((((((((((((..(((....)))--.)))))))).....(((((..(((((((..........))).))))...))))).((((.(((....)-)))---))).)))))..----- ( -29.30, z-score = -1.57, R) >droYak2.chr2L 4637816 107 - 22324452 UUCGAGGUAUUUCUAUCUAAUUAGA--CGAAAUGCCAUAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAACGGAGCGACUUGAUCUGAUUA-GGC---GCGAUCGAAUC----- (((((((((((((..(((....)))--.))))))))...............((((((((..(((((....)))))(((.........)))..)))-)))---))..)))))..----- ( -31.70, z-score = -2.05, R) >droEre2.scaffold_4929 4701676 107 - 26641161 UUCGAGGCAUUUCUAUCUAAUUAGA--CGAAAUGCCAUAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUGGAGCGACUUGAUCUGAUUA-GGC---GAGAUCGAAUC----- (((((((((((((..(((....)))--.)))))))).....(((((..(((((((..........))).))))...))))).((((.(((....)-)))---))).)))))..----- ( -31.30, z-score = -2.00, R) >droAna3.scaffold_12943 1817194 116 + 5039921 UUCAUGGCAUUUCCGUCUAAUUAGA--AGAAAUGCCAAAGAUGCCCGAUUGGCGCCUAAGUGUUUGUGACCAAAUCAAGCAGGUUGAUCUGAUUAUGGCCCGGCGAUCAAAUCGAAUC ....(((((((((..(((....)))--.)))))))))........(((((((((((....((((((.........))))))((((...........)))).)))).)).))))).... ( -31.70, z-score = -1.27, R) >dp4.chr4_group3 467860 108 + 11692001 UUUGUGGCAUUUCUAUCUAAUUAGA--CGAAAUGCCAAAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUCCAGUUGGUUGAUCUGAUUA-GGC--AUCGAUCGCUUC----- ....(((((((((..(((....)))--.)))))))))..((.((...((((..((((((.......(((((((......)))))))......)))-)))--..)))).)).))----- ( -31.62, z-score = -2.36, R) >droPer1.super_8 1506177 108 + 3966273 UUUGUGGCAUUUCUAUCUAAUUAGA--CGAAAUGCCAAAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUCCAGUUGGUUGAUCUGAUUA-GGC--AUCGAUCGCAUC----- ....(((((((((..(((....)))--.)))))))))..(((((...((((..((((((.......(((((((......)))))))......)))-)))--..)))).)))))----- ( -35.92, z-score = -3.62, R) >droWil1.scaffold_180703 1362668 107 + 3946847 ----UGCCAUUUCUAGCUAAUUAAAGCACAGAUGCCAAAGAUUCUCAAUUGGCGCCAAAGUGUUUCUGACCAAAUCUAGAAUCUUGCUC-GGUUAGUGGUUGAGGUUCUAAU------ ----((.(((((...(((......)))..))))).)).(((..((((((((((((....))))).((((((..................-)))))).)))))))..)))...------ ( -21.87, z-score = 0.39, R) >droMoj3.scaffold_6500 11993315 94 + 32352404 UGUGCGGCAUCUGGCGUUAAUUAAG--CCAAACGCCAAAGAUGCUCAAUUGACGCCCAAGUGUUUUUGACCAUAUACAGAAUGUUGCUCCGAUUAC---------------------- ...(((((((((((((((.......--...))))))....(((.((((..(((((....))))).)))).)))....)).))))))).........---------------------- ( -24.90, z-score = -1.70, R) >droVir3.scaffold_12963 8531423 94 + 20206255 UUUGCGGCAUUUGGCGCUAAUUAAA--CCAAAUGCCAAAGAUGCUCAAUUCACGCCCAAGUGUUUAUAGCCAUAAACAGAAAGUUGCUCCGAUUAC---------------------- ...(((((((((((...........--)))))))))......(((.....(((......))).....)))...............)).........---------------------- ( -20.20, z-score = -0.91, R) >droGri2.scaffold_15126 3170703 94 + 8399593 UCUGUGGCAUUUGACGCUAAUUAAA--CCAAGUGCCAAAGAUGCUGAAUUCACGCCUAAGUGUUUGUGGCCAUAAAAAGAAUGAUGCUCCGAUUAC---------------------- (((.(((((((((............--.))))))))).))).((...((((((((....))))((((....))))...))))...)).........---------------------- ( -19.72, z-score = -0.74, R) >consensus UUCGAGGCAUUUCUAUCUAAUUAGA__CGAAAUGCCAAAGAUGCUCAAUUGGCGCCUAAGUGUUUGUGACCAAAUGGAGCAACUUGAUCUGAUUA_GGC___GAGAUCGAAUC_____ .....((((((((...............)))))))).....((.(((...(((((....)))))..))).)).............................................. (-13.22 = -13.09 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:00 2011