| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,627,965 – 8,628,017 |
| Length | 52 |
| Max. P | 0.852272 |
| Location | 8,627,965 – 8,628,017 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 89.74 |
| Shannon entropy | 0.14128 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -4.40 |
| Consensus MFE | -4.84 |
| Energy contribution | -4.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.39 |
| Structure conservation index | 1.10 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8627965 52 + 24543557 UUUUCAAUGUUAACAUUUCGAAUUCGUGACCUGUAGUCUUUGUUCUAAUCCU .....((((....))))..((((....(((.....)))...))))....... ( -4.50, z-score = -0.35, R) >droSec1.super_0 906532 52 + 21120651 UUUUCAAUGUUAACAUUUCGAAUUCGUGACCUGUAGUCUUUGUUCUAAUCCU .....((((....))))..((((....(((.....)))...))))....... ( -4.50, z-score = -0.35, R) >droEre2.scaffold_4784 20343617 52 - 25762168 UUUUCAAUGAUAUCAUUUCGAAUUCGUCACCUAUUGUGUUUGUUCUAACCCC .....((((....))))..((((....(((.....)))...))))....... ( -4.20, z-score = -0.47, R) >consensus UUUUCAAUGUUAACAUUUCGAAUUCGUGACCUGUAGUCUUUGUUCUAAUCCU .....((((....))))..((((....(((.....)))...))))....... ( -4.84 = -4.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:02 2011