| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,609,501 – 8,609,563 |
| Length | 62 |
| Max. P | 0.983284 |
| Location | 8,609,501 – 8,609,563 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Shannon entropy | 0.40394 |
| G+C content | 0.47360 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.11 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8609501 62 - 24543557 --AGAGUGUUAAACAGCUGUGAGUAUCCAUG-AUGCUGGGUAC-UCUACGGUACUUUGGC-AUUCGU --.((((((((((..((((((((((((((..-....)))))))-)).)))))..))))))-)))).. ( -28.80, z-score = -5.46, R) >droPer1.super_50 212426 66 - 557249 AGAGAGUGCUAGACAGCUGCGUGGUUGAAGGUAUCCUUGUUCCUUUACCGGUACUUUGGC-ACCCGU ...(.((((((((..((((.((((..(((.(......).)))..))))))))..))))))-)).).. ( -18.80, z-score = -0.62, R) >dp4.chrXR_group8 218746 66 + 9212921 AGAGAGUGCUAGACAGCUGCGUGGUUGAAGGUAUCCUUGUUCCUUUACCGGUACUUUGGC-ACCCGU ...(.((((((((..((((.((((..(((.(......).)))..))))))))..))))))-)).).. ( -18.80, z-score = -0.62, R) >droAna3.scaffold_13337 15262029 64 + 23293914 --AGAGUGUUAGACAGCUGUAAGUAUCCAUG-AUCCUUGGUACGACUCUGGUACUUUGGCAAUUCGU --.((((((((((..(((....(((.(((..-.....))))))......)))..)))))).)))).. ( -11.40, z-score = 0.93, R) >droYak2.chr3L 20894460 63 + 24197627 --AGAGUGUUAGACAGCUGUGAGUACCCAAG-AUGCUUGGUAC-UCGGCGGUACUUUGGCAUUUAAU --.((((((((((..((((((((((((.(((-...))))))))-)).)))))..))))))))))... ( -23.90, z-score = -3.49, R) >droSec1.super_0 888274 62 - 21120651 --AGAGUGUUAAACAGCUGUGAGUAUCCAUG-AUGCUGGGUAC-UCCACGGUACUUUGGC-AUUCGU --.((((((((((..((((((((((((((..-....)))))))-).))))))..))))))-)))).. ( -28.80, z-score = -5.12, R) >droSim1.chr3L 8051447 62 - 22553184 --AGAGUGUUAAACAGCUGUGAGUAUCCAUG-AUGCUGGGUAC-UCCACGGUACUUUGGC-AUUCGU --.((((((((((..((((((((((((((..-....)))))))-).))))))..))))))-)))).. ( -28.80, z-score = -5.12, R) >consensus __AGAGUGUUAGACAGCUGUGAGUAUCCAUG_AUGCUUGGUAC_UCAACGGUACUUUGGC_AUUCGU ...((((((((((..((((...(((((((.......))))))).....))))..)))))).)))).. (-11.90 = -12.11 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:01 2011