| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,602,348 – 8,602,467 |
| Length | 119 |
| Max. P | 0.689457 |
| Location | 8,602,348 – 8,602,467 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.37 |
| Shannon entropy | 0.39493 |
| G+C content | 0.39488 |
| Mean single sequence MFE | -28.64 |
| Consensus MFE | -17.50 |
| Energy contribution | -18.14 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8602348 119 + 24543557 UUGGGUAAGCCCAUUUGAUGGCUUGGCUUCUUCAUAAUUCGAUUAGGCUUUUGAUUUGCCACUUCAGACCACCGCAAAUGGGUUAAUUCAUUAAACUAAUUUGAUGUAUUUUCCAAAUC- (((((..((((((((((.(((((((((....(((.((..(.....)..)).)))...))))....)).)))...))))))))))....(((((((....))))))).....)))))...- ( -31.00, z-score = -2.29, R) >droEre2.scaffold_4784 20316971 112 - 25762168 GUGGGUA-AUCCAUUUGAGGGCUCGACUUCUGCAUAAUUCGAUUAGGCGUUUGAUGUGGCACUUCACA---CGGCAAGUGGGUGAGCUCAUUAAGCUCACUUAAUAUUAAAAAAAC---- (((((..-..))...((((((((........((((....((......))....))))))).)))))))---)......((((((((((.....)))))))))).............---- ( -26.60, z-score = -0.64, R) >droYak2.chr3L 20886704 116 - 24197627 GUGUGUGCACCCAUUUGAUGGCUUGACUUGUGCGUAAUUCGAUUAGGCUUUUGAUUUGCCACUUCAGA---CCGCAAGUGGAUUUAUUCAUUAAGCUCAUUAAAUGUUUAGAAAAAAUC- (((....))).(((((((((((((((((((((.((.....((...(((.........)))...))..)---)))))))).((.....))..))))).))))))))).............- ( -28.40, z-score = -1.40, R) >droSec1.super_0 881183 120 + 21120651 GUGGGUAAGCCCAUUUGAUGGCUUGACUUCUUCAUAAUUCGAUUAGGCUUUUGAUUUGCCACUUCAGACCGCCGCAAGUGCGUUAAUUCAUUAAGCUCAUUAGAUUUUUUUUUCAAAAUC .((((....))))(((((((((((((..............((...(((.........)))...))....((((....).)))........)))))).)))))))................ ( -27.80, z-score = -1.44, R) >droSim1.chr3L 8044353 104 + 22553184 GUGGGUAAGCCCAUUUGAUGGCUUGACUUCUUCAUAAUUCGAUUAGGCUUUUGAUUUGCCACUUCAGACCGCCGCAAGUGGGUUAAUUCAUUAAGCUCAUUUAA---------------- ((((((.((((((((((.((((.(((.....)))......((...(((.........)))...)).....)))))))))))))).)))))).............---------------- ( -29.40, z-score = -2.09, R) >consensus GUGGGUAAGCCCAUUUGAUGGCUUGACUUCUUCAUAAUUCGAUUAGGCUUUUGAUUUGCCACUUCAGACC_CCGCAAGUGGGUUAAUUCAUUAAGCUCAUUUAAUGUUUAUAAAAAA___ ((((((.((((((((((.(((.((((.((......)).))))...(((.........)))...........))))))))))))).))))))............................. (-17.50 = -18.14 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:12:00 2011