| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,599,578 – 8,599,674 |
| Length | 96 |
| Max. P | 0.575323 |
| Location | 8,599,578 – 8,599,674 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.18 |
| Shannon entropy | 0.34474 |
| G+C content | 0.48257 |
| Mean single sequence MFE | -28.19 |
| Consensus MFE | -20.88 |
| Energy contribution | -22.17 |
| Covariance contribution | 1.29 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8599578 96 - 24543557 GUGUGUGUGUUCUCGUGCUCUUGGCACUGAAAAUUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCA .(((....(((.((((((.....((((((..(((((((((((...........)))))))))))...))))))))))))..)))......)))... ( -29.00, z-score = -0.66, R) >droSim1.chr3L 8041579 90 - 22553184 ------GUGUUCUCGUGCUCUUGGCACUGAAAACUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCA ------..(((.((((((.....((((((..(((((((((((...........)))))))))))...))))))))))))..)))............ ( -31.00, z-score = -2.16, R) >droSec1.super_0 878433 90 - 21120651 ------GUGUUCUCGUGCUCUUGGCACUGAAAAUUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCA ------..(((.((((((.....((((((..(((((((((((...........)))))))))))...))))))))))))..)))............ ( -28.60, z-score = -1.45, R) >droYak2.chr3L 20883815 82 + 24197627 --------------GUGCUCUUGGCACUGAAAAUUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCG --------------..(((....((((((..(((((((((((...........)))))))))))...))))))((((((......)))).))))). ( -28.30, z-score = -2.29, R) >droEre2.scaffold_4784 20314375 86 + 25762168 ----------CCUCGUGCUCUUGGCACUGAAAAUUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCG ----------...(((((.....((((((..(((((((((((...........)))))))))))...)))))).(((((......)))))))).)) ( -28.60, z-score = -1.84, R) >droAna3.scaffold_13337 15253450 90 + 23293914 ------GGGGCUGUAUCCUGUUGGCACUGCAAUUGGCGUGCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUAGCACCA ------.(((((((((((.....((((.((.....)))))).......)))......))))))))...(((((.(((((......)))))))))). ( -28.80, z-score = -0.70, R) >dp4.chrXR_group8 209363 84 + 9212921 ----------GAGCCUGCUGCUGGCACUGC-AUUUACA-GCAUGCAGCACAAUUUGCUCCGGUUCAACGGUGCGUAUGAUUAACUUUGAAGCUGCC ----------.((((((((((((.......-.....))-))).))))..((...(((.(((......))).)))..))............)))... ( -23.00, z-score = 0.52, R) >consensus ______G_G_UCUCGUGCUCUUGGCACUGAAAAUUGCAGCCAUGUAAUGGAAUUGGCUGCGGUUCAACGGUGCGUAUGAUUAACUUUAUGGCAGCA ...............(((.....((((((..(((((((((((...........)))))))))))...)))))).(((((......))))))))... (-20.88 = -22.17 + 1.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:59 2011