| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,571,829 – 8,571,885 |
| Length | 56 |
| Max. P | 0.547766 |
| Location | 8,571,829 – 8,571,885 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.32036 |
| G+C content | 0.53879 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8571829 56 + 24543557 -------CAAAAACGACGACGCAUGGAC---GGACCAGCGGACU-CCGUGCGCGAUUUUCAUUCACU -------.........((.((((((((.---(..(....)..))-)))))))))............. ( -16.20, z-score = -1.86, R) >droSim1.chr3L 8012983 56 + 22553184 -------CAAAAACGACGACGCAUGGAC---GGACCAGCGGACU-CCGUGCGCGAUUUUCAUUCACU -------.........((.((((((((.---(..(....)..))-)))))))))............. ( -16.20, z-score = -1.86, R) >droSec1.super_0 851022 56 + 21120651 -------CAAAAACGACGACGCAUGGAC---GGACCAGCGGACU-CCGUGCGCGAUUUUCAUUCACU -------.........((.((((((((.---(..(....)..))-)))))))))............. ( -16.20, z-score = -1.86, R) >droYak2.chr3L 20855716 55 - 24197627 --------CAAAACGACGUCGCAUGGAC---GGACCAGCGGACU-CCGUGCGCGAUUUUCAUUCACU --------........((.((((((((.---(..(....)..))-)))))))))............. ( -16.20, z-score = -1.29, R) >droEre2.scaffold_4784 20286540 53 - 25762168 ---------AAAACGACGACGCAUGGAC---G-ACCAGCGGACU-CCGUGCGCGAUUUUCAUUCACU ---------.......((.((((((((.---(-.((...)).))-)))))))))............. ( -15.10, z-score = -1.78, R) >droAna3.scaffold_13337 15226469 66 - 23293914 CUAAAAAAAACGACGACGUCGCAUGGACUGCGAUUCUGCGGACU-CCGUGCGCGAUUUUCAUUCAGU ...........((.((((.(((((((((((((....)))))..)-))))))))).)).))....... ( -20.70, z-score = -1.93, R) >droMoj3.scaffold_6680 4543606 52 + 24764193 ---------CUAACGACAACGCAUGGAC------GCGACGGUUUACCGUGCGCGAUUUUCAUUCAAU ---------...........(.((((((------(((((((....)))).))))...))))).)... ( -14.20, z-score = -1.71, R) >consensus ________AAAAACGACGACGCAUGGAC___GGACCAGCGGACU_CCGUGCGCGAUUUUCAUUCACU ................((.(((((((...................)))))))))............. (-10.20 = -10.34 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:53 2011