| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,571,429 – 8,571,530 |
| Length | 101 |
| Max. P | 0.533795 |
| Location | 8,571,429 – 8,571,530 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 64.87 |
| Shannon entropy | 0.71978 |
| G+C content | 0.41978 |
| Mean single sequence MFE | -24.72 |
| Consensus MFE | -7.88 |
| Energy contribution | -7.52 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8571429 101 - 24543557 ---CACACACUAUUUCGC--UUGGGCAAGGUAUUUUUAGAGAUAUAGCCUCGGCCAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGGU----AAUGGAAAAUGGAUGGGG- ---....(((((((((((--(.((((...((((((....)))))).)))).)))((((((((.(((((((.....))))))).)))))----.)))).)))))).))...- ( -29.30, z-score = -1.46, R) >droAna3.scaffold_13337 15226066 99 + 23293914 ---CACAAAUUAUUUAGCCGUGGGGGAAGGUAUUUUUAGAUAUUU--------CUAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGAUUUUAAAUGCAAAUCGAUUGAGG- ---..(((.........((....))((..((((((.((((....)--------))).(((((.(((((((.....))))))).)))))...))))))...))..)))...- ( -18.20, z-score = 0.30, R) >droEre2.scaffold_4784 20286131 105 + 25762168 CAUCACACACUAUUUCGC--UUGGAAAAGGUAUUUUCAGGGAUAUAGCCUCUGCCAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGGU----AAUGGAAAAAGGGUUGGGG ..(((.((.((((.((.(--(((((((.....)))))))))).))))(((...(((((((((.(((((((.....))))))).)))))----.))))....)))))))).. ( -30.10, z-score = -1.30, R) >droYak2.chr3L 20855295 102 + 24197627 ---CACACACUGUUUCGC--UUGGGAAUGGUAUUUUUAGAGAUACAGCCUCUGCCAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGGU----AAUGGAAAAUGGGAGGGGA ---......((((.((..--((((((((...)))))))).)).))))(((((.(((((((((.(((((((.....))))))).)))))----)........))).))))). ( -29.80, z-score = -1.13, R) >droSec1.super_0 850621 101 - 21120651 ---CACACACUAUUUCGC--UUGAGCGAGAUAUUUUUAGAGAUAUAGCCUCGGCCAUAUCGACUUGGUUGAUUGCCAGCCAGAUUGGU----AAUGGAAAAUGGAUGGGG- ---.......((((((((--....))))))))...............(((((.(((((((((.(((((((.....))))))).)))))----.))))........)))))- ( -28.40, z-score = -1.79, R) >droSim1.chr3L 8012583 101 - 22553184 ---CACACACUAUUUCGC--UUAAGCGAGAUAUUUUUAGAGAUAUAGCCUCGGCCAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGGU----AAUGGAAAAUGGAUGGGG- ---((..((.((((((((--....))))))))(((((((((.......))).((((.(((..((((((.....))))))..)))))))----..)))))).))..))...- ( -28.40, z-score = -1.87, R) >droVir3.scaffold_13049 6227093 93 - 25233164 ---CACAUAGAGCUUGACGAUAUAUUUAGGCAUUGUAUCUUGCACAAGAUGGAU--UCGUCAGUUGGUUGGCUGCCAACAGCGAAGGA----AAUGAUGAAU--------- ---........(((((((((..(((((.((((........))).).)))))...--))))))((((((.....)))))))))......----..........--------- ( -24.30, z-score = -1.43, R) >droPer1.super_50 172684 80 - 557249 ---CACACAUUAUUUCGCAUUUCA--AGUGUAUUUAUAGAGAUACAGCUUCAUCGAUAGAGAGUUGGUUGCAUGCCAACCU--UUGA------------------------ ---...........(((.((...(--(((((((((....))))))).))).)))))(((((.((((((.....))))))))--))).------------------------ ( -17.00, z-score = -1.55, R) >dp4.chrXR_group8 179091 80 + 9212921 ---CACACAUUAUUUCGCAUUUCA--AGUGUAUUUAUAGAGAUACAGCUUCAUCGAUAGAGAGUUGGUUGCAUGCCAACCU--UUGA------------------------ ---...........(((.((...(--(((((((((....))))))).))).)))))(((((.((((((.....))))))))--))).------------------------ ( -17.00, z-score = -1.55, R) >consensus ___CACACACUAUUUCGC__UUGAGCAAGGUAUUUUUAGAGAUAUAGCCUCGGCCAUAUCGAGUUGGUUGAUUGCCAGCCAGAUUGGU____AAUGGAAAAUGG_UGGGG_ .............................((((((....)))))).................((((((.....))))))................................ ( -7.88 = -7.52 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:53 2011