| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,566,558 – 8,566,648 |
| Length | 90 |
| Max. P | 0.637809 |
| Location | 8,566,558 – 8,566,648 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 59.72 |
| Shannon entropy | 0.87739 |
| G+C content | 0.43740 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -6.35 |
| Energy contribution | -6.22 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8566558 90 - 24543557 AAGUUACGCGUCUCAUAUCUG-CAAUUUAUCAAG--AG---GAUUAGCAA-AUGCGAUCAA-UAGGGU--AUG--GGUUAAAGCGCACCUGGACGUGUAUCC ....((((((((((((((((.-............--..---((((.((..-..))))))..-..))))--)))--(((........))).)))))))))... ( -21.41, z-score = -0.77, R) >droSec1.super_0 845809 89 - 21120651 AAGUUACGCGUCUCAUAUCUG-GAAUUUAUCAAG--AG---GAUUAGCAA--AGUGCUCAA-UAGGGA--AUG--GGUUCAAGCGCACCUGGACGUGUAUCC ....(((((((((........-...........(--((---.(((.....--))).)))..-..(((.--.((--.((....)).))))))))))))))... ( -20.20, z-score = -0.19, R) >droYak2.chr3L 20850513 91 + 24197627 AAGUUACGCGUCUCAUAUCUG-CAAUUUACCAAC--AG---AAUUAGCAA-GAGGAAACAAUUAAGAA--AAG--GGUUCAAUCCCACCUGGACGUGUAUCC ....(((((((((....((((-((((((......--.)---)))).)).)-))(....).........--..(--((......)))....)))))))))... ( -21.80, z-score = -2.50, R) >droEre2.scaffold_4784 20281244 90 + 25762168 AAGUUACGCGUCUCAUAUCUG-CAAUUUACCAAG--AG---GAUUAGCAA-AAGCAAUCAA-GAAGGU--AAG--AGUUCAAUCUCACCUGGACGUGUAUCC ....(((((((((........-....(((((...--..---((((.((..-..))))))..-...)))--))(--((......)))....)))))))))... ( -23.30, z-score = -2.94, R) >droAna3.scaffold_13337 15220693 101 + 23293914 AAGUUGCGCGUCUCGUAUCUGCUGGAGGGAAUAAUAGAAAUGGUCAGUACU-GUUCCUUGAGGACAUCCUUCGACUUUCAGAACCCACCUGGAGGUGUAGCC ..(((((((.(((.((.....(((((((.............((.((....)-)..))((((((.....))))))))))))).....))..))).))))))). ( -25.80, z-score = 0.54, R) >dp4.chrXR_group3a 1322907 95 + 1468910 AAGUUGCGCGUCUCGUAUCUAGCAGUACAGUAAACCAG---GAUUAGUAU--AGGUAUUGAGGAUAUU--AUCCCGCUUAGGACCUACCUUGACGUGUAACC ..((((((((((..((((((..((((((..((.((...---.....)).)--).)))))).)))))).--.(((......)))........)))))))))). ( -25.70, z-score = -1.32, R) >droPer1.super_23 1513362 95 + 1662726 AAGUUGCGCGUCUCGUAUCUAGCAGUACAGUAAACCAG---GAUUAGUAU--AGGUAUUAAGGAUAUU--AUCCCGCUUAGGACCUACCUUGACGUGUAACC ..((((((((((..((((......))))..........---........(--((((.((((((((...--))))...)))).)))))....)))))))))). ( -24.00, z-score = -0.97, R) >droWil1.scaffold_180949 5216119 90 - 6375548 AAGUUGCGCGUUUCGUAUCUA--AUUAAAAUGAA--AA---GAUUAAAAUCAUGUCACUCUCGAUAUU--GUC---UUUCAGACAUACCUAGACGUGUAACC ..(((((((((((.(((....--...........--..---..........(((((......)))))(--(((---.....)))))))..))))))))))). ( -19.30, z-score = -2.51, R) >droVir3.scaffold_13049 6217099 95 - 25233164 AAGUUGCGGGUCUCGUAUCUGCUAAGGAGCGGGCAAGG---GAUUAGCGUU--UGGACUGGCAAUGUC--UAAAUAAUUCUCACUCACCUGGACGUGUAGCC ..((((((.((((.(..((((((....))))))...((---((.....(((--(((((.......)))--)))))...))))......).)))).)))))). ( -28.60, z-score = -0.84, R) >droMoj3.scaffold_6680 4538655 93 - 24764193 AAGUUGCGCGUCUCGUAUCUGCUGAAGAGCAUGGCUAAA--GGUUAGCAUU-------UAAGCACUCCACAUCUGAAUGUGGACUCACCUGGAUGUGUAGCC ..(((((((((((.((...((((....))))..))...(--(((..((...-------...))..(((((((....)))))))...))))))))))))))). ( -30.80, z-score = -1.85, R) >droGri2.scaffold_15072 38050 93 - 214506 AAGUUUCGCGUCUCGUAUCUGCUGAAGAACCCAAA------GGUUAGCACA--AAUUUUGGGAGGAACA-GAAUAAUUAUGAACUAACCUGGAUGUGUAACC ..(((.(((((((....(((.....)))......(------((((((..((--.((((((.......))-)))).....))..)))))))))))))).))). ( -20.70, z-score = -0.80, R) >consensus AAGUUGCGCGUCUCGUAUCUG_CAAUGAACCAAA__AG___GAUUAGCAU__AGGGAUUAAGGAUAUU__AUG__GGUUCAAACCCACCUGGACGUGUAACC ....((((((((...............................................................................))))))))... ( -6.35 = -6.22 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:52 2011