| Sequence ID | dm3.chr3L |
|---|---|
| Location | 8,549,010 – 8,549,061 |
| Length | 51 |
| Max. P | 0.994631 |
| Location | 8,549,010 – 8,549,061 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 67.28 |
| Shannon entropy | 0.49607 |
| G+C content | 0.43129 |
| Mean single sequence MFE | -8.30 |
| Consensus MFE | -6.93 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.994631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 8549010 51 + 24543557 ------AACUGAAACUAAAUCGAAC-CCAACCCAUUAGCCGAAGAUAAUCGGCUGAAU ------...................-........((((((((......)))))))).. ( -11.40, z-score = -4.67, R) >droSim1.chr3L 7991206 51 + 22553184 ------AACUGAAACUAAAUCGAAC-CCAACCCAUUAGCCGAAGAUAAGCGGCUGACU ------...................-........(((((((........))))))).. ( -9.50, z-score = -3.25, R) >droSec1.super_0 828137 51 + 21120651 ------AACUGAAACUAAAUCGAAC-CCAACCCAUUAGCCGAAGAUAAGCGGCUUACU ------...................-..........(((((........))))).... ( -6.70, z-score = -1.70, R) >droPer1.super_23 1491996 58 - 1662726 UAUAGAUAUUACUUCCUCCUCCAACGUCAACCCUUCAGUGGAAUCGGAUCAAUCGGAU ....(((......(((...((((..(.........)..))))...)))...))).... ( -5.60, z-score = 1.74, R) >consensus ______AACUGAAACUAAAUCGAAC_CCAACCCAUUAGCCGAAGAUAAGCGGCUGAAU ..................................(((((((........))))))).. ( -6.93 = -6.80 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:11:48 2011